sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3l8y | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3l8y | GNP | GTPase HRas | / | 1.241 | |
| 3rs0 | GNP | GTPase HRas | / | 1.235 | |
| 3rsl | GNP | GTPase HRas | / | 1.234 | |
| 4l9w | GNP | GTPase HRas | / | 1.234 | |
| 3lbn | GNP | GTPase HRas | / | 1.233 | |
| 3rs5 | GNP | GTPase HRas | / | 1.216 | |
| 3rs7 | GNP | GTPase HRas | / | 1.216 | |
| 4dlz | GNP | GTPase HRas | / | 1.216 | |
| 3oiw | GNP | GTPase HRas | / | 1.215 | |
| 3rs4 | GNP | GTPase HRas | / | 1.215 | |
| 4dlx | GNP | GTPase HRas | / | 1.215 | |
| 3lbi | GNP | GTPase HRas | / | 1.200 | |
| 4dlv | GNP | GTPase HRas | / | 1.200 | |
| 4dlt | GNP | GTPase HRas | / | 1.199 | |
| 2rgc | GNP | GTPase HRas | / | 1.196 | |
| 3i3s | GNP | GTPase HRas | / | 1.190 | |
| 3oiv | GNP | GTPase HRas | / | 1.185 | |
| 3v4f | GNP | GTPase HRas | / | 1.183 | |
| 4dlw | GNP | GTPase HRas | / | 1.181 | |
| 5b2z | GNP | GTPase HRas | / | 1.181 | |
| 3k8y | GNP | GTPase HRas | / | 1.180 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.169 | |
| 3oiu | GNP | GTPase HRas | / | 1.164 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.163 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.162 | |
| 4dls | GNP | GTPase HRas | / | 1.161 | |
| 2rge | GNP | GTPase HRas | / | 1.156 | |
| 2c5l | GTP | GTPase HRas | / | 1.149 | |
| 4dsn | GCP | GTPase KRas | / | 1.148 | |
| 2rgb | GNP | GTPase HRas | / | 1.147 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.147 | |
| 4g0n | GNP | GTPase HRas | / | 1.113 | |
| 4nyi | GNP | GTPase HRas | / | 1.095 | |
| 3ddc | GNP | GTPase HRas | / | 1.089 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.089 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.087 | |
| 4nyj | GNP | GTPase HRas | / | 1.085 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.078 | |
| 3k9l | GNP | GTPase HRas | / | 1.077 | |
| 4k81 | GTP | GTPase HRas | / | 1.074 | |
| 2rgg | GNP | GTPase HRas | / | 1.065 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.062 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.054 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.054 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 1.054 | |
| 3tgp | GNP | GTPase HRas | / | 1.044 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.041 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.040 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.039 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.039 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.038 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 1.034 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.029 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.028 | |
| 3lbh | GNP | GTPase HRas | / | 1.024 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.022 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.018 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.016 | |
| 4xvq | GNP | GTPase HRas | / | 1.010 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.004 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 1.003 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.002 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 1.000 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 0.998 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.998 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.997 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.997 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.993 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.992 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.991 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.990 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.985 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.984 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.984 | |
| 4dso | GSP | GTPase KRas | / | 0.981 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.976 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.975 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.974 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.973 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.971 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.967 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.965 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.964 | |
| 4ql3 | GDP | GTPase KRas | / | 0.962 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.961 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.960 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.954 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.953 | |
| 3kud | GDP | GTPase HRas | / | 0.953 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.952 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.952 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.950 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.950 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.946 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.942 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.942 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.941 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.941 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.940 | |
| 2cl6 | CAG | GTPase HRas | / | 0.937 | |
| 4mit | GTP | Rho-related protein racC | / | 0.937 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.936 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.936 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.935 | |
| 2ce2 | GDP | GTPase HRas | / | 0.935 | |
| 4wa7 | GDP | GTPase KRas | / | 0.933 | |
| 4xvr | GNP | GTPase HRas | / | 0.929 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.928 | |
| 4l9s | GDP | GTPase HRas | / | 0.927 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.926 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.926 | |
| 4q02 | GDP | GTPase KRas | / | 0.926 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.924 | |
| 4dvg | GSP | Rho family GTPase | / | 0.923 | |
| 4epx | GDP | GTPase KRas | / | 0.923 | |
| 4l8g | GDP | GTPase KRas | / | 0.920 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.918 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.915 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.914 | |
| 4tq9 | GDP | GTPase KRas | / | 0.912 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.908 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.906 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.906 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.904 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.903 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.903 | |
| 4lv6 | GDP | GTPase KRas | / | 0.903 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.899 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.896 | |
| 4epw | GDP | GTPase KRas | / | 0.896 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.894 | |
| 1lfd | GNP | GTPase HRas | / | 0.893 | |
| 3r9x | GNP | GTPase Era | / | 0.893 | |
| 4ldj | GDP | GTPase KRas | / | 0.893 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.890 | |
| 4q03 | GDP | GTPase KRas | / | 0.889 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.884 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.883 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.880 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.880 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.880 | |
| 4obe | GDP | GTPase KRas | / | 0.878 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.878 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.877 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.876 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.875 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.873 | |
| 3ftq | GNP | Septin-2 | / | 0.872 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.871 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.870 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.870 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.866 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.866 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.863 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.862 | |
| 4dsu | GDP | GTPase KRas | / | 0.860 | |
| 4lpk | GDP | GTPase KRas | / | 0.860 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.857 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.854 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.853 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.853 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.853 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.851 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.848 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.848 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.848 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.846 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.844 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.841 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.840 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.840 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.838 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.838 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.836 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.836 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.834 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.833 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.832 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.832 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.831 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.829 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.828 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.826 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.825 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.825 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.824 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.824 | |
| 3ref | GDP | Rho family GTPase | / | 0.824 | |
| 4lrw | GDP | GTPase KRas | / | 0.824 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.823 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.823 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.818 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.818 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.817 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.817 | |
| 4luc | GDP | GTPase KRas | / | 0.817 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.815 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.815 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.815 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.813 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.812 | |
| 4db1 | ANP | Myosin-7 | / | 0.812 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.809 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.808 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.808 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.806 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.806 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.806 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.806 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.802 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.801 | |
| 5bn3 | ADP | NEQ263 | / | 0.801 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.800 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.800 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.799 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.799 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.795 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.795 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.792 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.787 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.787 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.787 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.786 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.785 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.785 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.785 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.784 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.783 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.783 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.783 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.782 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.781 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.774 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.773 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.773 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.773 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.772 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.772 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.771 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.771 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.770 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.769 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.768 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.768 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.767 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.763 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.763 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.761 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.761 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.760 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.760 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.759 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.757 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.757 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.756 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.754 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.754 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.754 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.754 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.753 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.752 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.751 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.751 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.750 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.750 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.750 | |
| 2fna | ADP | Uncharacterized protein | / | 0.748 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.748 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.748 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.747 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.747 | |
| 5cyo | GDP | Septin-9 | / | 0.747 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.746 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.746 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.746 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.746 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.745 | |
| 3hpr | AP5 | Adenylate kinase | / | 0.745 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.743 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.741 | |
| 4yqf | GDP | Septin-9 | / | 0.741 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.740 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.739 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.739 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.739 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.738 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.738 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.737 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.737 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.737 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.737 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.736 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.736 | |
| 1xms | ANP | Protein RecA | / | 0.736 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.736 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.736 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.735 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.734 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.734 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.733 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.733 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.731 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.731 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.731 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.730 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.729 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.729 | |
| 1ank | ANP | Adenylate kinase | / | 0.728 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.728 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.727 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.726 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.725 | |
| 1xmv | ADP | Protein RecA | / | 0.725 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.725 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.725 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.724 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.724 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.724 | |
| 2zts | ADP | Uncharacterized protein | / | 0.724 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.724 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.723 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.723 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.723 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.723 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.721 | |
| 4jky | ADP | Adenylate kinase | / | 0.721 | |
| 4v02 | ATP | Site-determining protein | / | 0.721 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.719 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.719 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.718 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.717 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.717 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.717 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.717 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.716 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.716 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.716 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.716 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.716 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.715 | |
| 4c30 | ANP | DNA helicase | / | 0.715 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.714 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.714 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.713 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.713 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.713 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.712 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.712 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.712 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.712 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.711 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.711 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.710 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.709 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.709 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.709 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.709 | |
| 2eck | ADP | Adenylate kinase | / | 0.708 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.708 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.708 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.707 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.706 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.706 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.705 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.704 | |
| 1ake | AP5 | Adenylate kinase | / | 0.703 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.703 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.702 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.702 | |
| 2qaj | AP5 | Adenylate kinase | / | 0.701 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.700 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.699 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.699 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.698 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.698 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.697 | |
| 4pl0 | ANP | Microcin-J25 export ATP-binding/permease protein McjD | / | 0.696 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.695 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.694 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.693 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.693 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.693 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.692 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.689 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.688 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.688 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.687 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.687 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.686 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.686 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.686 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.684 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.684 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.684 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.684 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.683 | |
| 4jlo | ADP | Adenylate kinase | / | 0.683 | |
| 2vp0 | TTP | Deoxynucleoside kinase | / | 0.682 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.681 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.681 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.681 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.681 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.680 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.680 | |
| 5fm6 | ADP | RuvB-like helicase | / | 0.680 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.679 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.679 | |
| 4iij | GTP | Tubulin alpha-1B chain | / | 0.679 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.678 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.678 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.677 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.676 | |
| 4xvu | ATP | ATPase GET3 | / | 0.676 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.675 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.675 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.675 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.675 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.674 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.672 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.672 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.670 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.670 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.669 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.668 | |
| 2zrj | AGS | Protein RecA | / | 0.668 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.668 | |
| 1nly | AGS | Cag alpha | / | 0.667 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.667 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.665 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.665 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.665 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.665 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.664 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.663 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.663 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.662 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.661 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.661 | |
| 5dac | AGS | Uncharacterized protein | / | 0.661 | |
| 4dwb | 0M7 | Farnesyl pyrophosphate synthase | / | 0.659 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.657 | |
| 2x19 | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.657 | |
| 1dvr | ATF | Adenylate kinase | / | 0.656 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.656 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.656 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.656 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.655 | |
| 1im2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.653 | |
| 2a84 | ATP | Pantothenate synthetase | 6.3.2.1 | 0.653 | |
| 3r7w | GNP | GTP-binding protein GTR2 | / | 0.653 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.652 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.651 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.651 | |
| 3lq2 | TDP | Pyruvate dehydrogenase E1 component | 1.2.4.1 | 0.651 | |
| 3tpt | ADP | Serine/threonine-protein kinase toxin HipA | / | 0.650 |