sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.934 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.862 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.842 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.800 | |
| 2axn | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | / | 0.790 | |
| 1j7k | ATP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.789 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.788 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.787 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.784 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.784 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.784 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.779 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.778 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.776 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.775 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.772 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.770 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.770 | |
| 2i1v | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.770 | |
| 3qpv | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.769 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.769 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.768 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.768 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.768 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.768 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.767 | |
| 2fna | ADP | Uncharacterized protein | / | 0.766 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.766 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.766 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.765 | |
| 3ieu | GDP | GTPase Era | / | 0.765 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.764 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.764 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.761 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.761 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.760 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.760 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.760 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.760 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.759 | |
| 5cyo | GDP | Septin-9 | / | 0.759 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.758 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.757 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.757 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.757 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.757 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.756 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.756 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.756 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.756 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.755 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.755 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.754 | |
| 4l8g | GDP | GTPase KRas | / | 0.754 | |
| 4lrw | GDP | GTPase KRas | / | 0.754 | |
| 3d8b | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.753 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.753 | |
| 4obe | GDP | GTPase KRas | / | 0.753 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.752 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.751 | |
| 4l9s | GDP | GTPase HRas | / | 0.751 | |
| 4qbg | AP5 | Adenylate kinase | / | 0.751 | |
| 4epw | GDP | GTPase KRas | / | 0.750 | |
| 4ymu | ATP | ABC-type polar amino acid transport system, ATPase component | / | 0.750 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.749 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.749 | |
| 4x8l | AP5 | Adenylate kinase | / | 0.749 | |
| 4jlo | ADP | Adenylate kinase | / | 0.748 | |
| 1p3j | AP5 | Adenylate kinase | / | 0.747 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.747 | |
| 4lv6 | GDP | GTPase KRas | / | 0.747 | |
| 4wa7 | GDP | GTPase KRas | / | 0.747 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.747 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.747 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.746 | |
| 4ma4 | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.746 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.745 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.745 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.745 | |
| 2zro | ADP | Protein RecA | / | 0.744 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.743 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.743 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.743 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.743 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.743 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.742 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.742 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.742 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.742 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.742 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.741 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.741 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.741 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.741 | |
| 4jky | ADP | Adenylate kinase | / | 0.741 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.740 | |
| 4luc | GDP | GTPase KRas | / | 0.740 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.740 | |
| 5bn3 | ADP | NEQ263 | / | 0.740 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.739 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.739 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.739 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.737 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.737 | |
| 3qbv | GDP | Cell division control protein 42 homolog | / | 0.736 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.736 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 0.735 | |
| 4jld | ADP | Adenylate kinase | / | 0.735 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.734 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.734 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.733 | |
| 1xmv | ADP | Protein RecA | / | 0.732 | |
| 2zrj | AGS | Protein RecA | / | 0.732 | |
| 4dso | GSP | GTPase KRas | / | 0.732 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.730 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.729 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.729 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.729 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.729 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.728 | |
| 2zr9 | DTP | Protein RecA | / | 0.728 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.727 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.727 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.727 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.727 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 0.726 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.726 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.726 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.726 | |
| 3kud | GDP | GTPase HRas | / | 0.726 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.726 | |
| 4lpk | GDP | GTPase KRas | / | 0.726 | |
| 1g6o | ADP | Cag alpha | / | 0.725 | |
| 2ce2 | GDP | GTPase HRas | / | 0.725 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.725 | |
| 4tq9 | GDP | GTPase KRas | / | 0.725 | |
| 1nly | AGS | Cag alpha | / | 0.724 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.724 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.724 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.723 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 0.723 | |
| 4qbi | AP5 | Adenylate kinase | / | 0.723 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.723 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.723 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.722 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.722 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.722 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.722 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.722 | |
| 4dsu | GDP | GTPase KRas | / | 0.722 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.721 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.721 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.721 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.721 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.721 | |
| 4q02 | GDP | GTPase KRas | / | 0.721 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.720 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.719 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.719 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.719 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.719 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.719 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.719 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.718 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.717 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.717 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.717 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.716 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.716 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.715 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.715 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.715 | |
| 4xvq | GNP | GTPase HRas | / | 0.715 | |
| 2xsz | ATP | RuvB-like 2 | 3.6.4.12 | 0.714 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.714 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.713 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.713 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.713 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.713 | |
| 2eck | ADP | Adenylate kinase | / | 0.713 | |
| 4tyq | AP5 | Adenylate kinase | / | 0.713 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.712 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.712 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.712 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.711 | |
| 4g0n | GNP | GTPase HRas | / | 0.711 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.710 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.710 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.710 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.709 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 0.709 | |
| 3ref | GDP | Rho family GTPase | / | 0.709 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.709 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.709 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.708 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.708 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.708 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.708 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.708 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.708 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.708 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.708 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.708 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.707 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.707 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.707 | |
| 3lbh | GNP | GTPase HRas | / | 0.707 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.707 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.707 | |
| 4xvr | GNP | GTPase HRas | / | 0.707 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.706 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.706 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.706 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.706 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.706 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.706 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.706 | |
| 5ftc | ADP | TPR domain protein | / | 0.706 | |
| 1ank | ANP | Adenylate kinase | / | 0.705 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.705 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.705 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.704 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.704 | |
| 3tgp | GNP | GTPase HRas | / | 0.704 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.704 | |
| 1e4y | AP5 | Adenylate kinase | / | 0.703 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.703 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.703 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.703 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.703 | |
| 3k9l | GNP | GTPase HRas | / | 0.703 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.703 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.703 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.702 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.702 | |
| 4ike | ADP | Adenylate kinase | / | 0.702 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.702 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.701 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.701 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.701 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.701 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.700 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.700 | |
| 2pc9 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.699 | |
| 4zca | ADP | Kinesin-like protein KIF11 | / | 0.699 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.698 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.698 | |
| 4yqf | GDP | Septin-9 | / | 0.698 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.697 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.697 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.697 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.697 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.697 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.697 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.697 | |
| 3ddc | GNP | GTPase HRas | / | 0.697 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.697 | |
| 1xkv | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.696 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.696 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.696 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.696 | |
| 1lfd | GNP | GTPase HRas | / | 0.695 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.695 | |
| 2rgb | GNP | GTPase HRas | / | 0.695 | |
| 2rge | GNP | GTPase HRas | / | 0.695 | |
| 2zts | ADP | Uncharacterized protein | / | 0.695 | |
| 1im2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.694 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.694 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.694 | |
| 3l8y | GNP | GTPase HRas | / | 0.694 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.694 | |
| 4dls | GNP | GTPase HRas | / | 0.694 | |
| 4dlt | GNP | GTPase HRas | / | 0.694 | |
| 4dlv | GNP | GTPase HRas | / | 0.694 | |
| 4dvg | GSP | Rho family GTPase | / | 0.694 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.693 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 0.693 | |
| 3v4f | GNP | GTPase HRas | / | 0.693 | |
| 4dlw | GNP | GTPase HRas | / | 0.693 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.693 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.693 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.692 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 0.692 | |
| 4dlz | GNP | GTPase HRas | / | 0.692 | |
| 4l9w | GNP | GTPase HRas | / | 0.692 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.691 | |
| 2dft | ADP | Shikimate kinase | 2.7.1.71 | 0.691 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.691 | |
| 3rs4 | GNP | GTPase HRas | / | 0.691 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.691 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.690 | |
| 1sxj | ADP | Replication factor C subunit 5 | / | 0.690 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.689 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.688 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.688 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.688 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.688 | |
| 1s3s | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.687 | |
| 4db1 | ANP | Myosin-7 | / | 0.687 | |
| 2rgg | GNP | GTPase HRas | / | 0.686 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.686 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.686 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.686 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.685 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 0.685 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.684 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.684 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.684 | |
| 3k8y | GNP | GTPase HRas | / | 0.684 | |
| 3kjg | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.684 | |
| 3oiu | GNP | GTPase HRas | / | 0.684 | |
| 3rs5 | GNP | GTPase HRas | / | 0.684 | |
| 3rs7 | GNP | GTPase HRas | / | 0.684 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 0.684 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.684 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.683 | |
| 2rgc | GNP | GTPase HRas | / | 0.683 | |
| 3rs0 | GNP | GTPase HRas | / | 0.683 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.682 | |
| 3lbi | GNP | GTPase HRas | / | 0.682 | |
| 3oiv | GNP | GTPase HRas | / | 0.682 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.682 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 0.682 | |
| 1zio | AP5 | Adenylate kinase | / | 0.681 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.681 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.681 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.681 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.681 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.681 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.680 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.680 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.680 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.680 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.679 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.679 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.679 | |
| 1e4v | AP5 | Adenylate kinase | / | 0.678 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.678 | |
| 2c98 | ADP | Psp operon transcriptional activator | / | 0.678 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.678 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.677 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.677 | |
| 1w7i | ADP | Unconventional myosin-Va | / | 0.677 | |
| 3bxz | ADP | Protein translocase subunit SecA | / | 0.677 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.677 | |
| 1n6m | ADP | Protein claret segregational | / | 0.676 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.676 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.676 | |
| 2cl6 | CAG | GTPase HRas | / | 0.675 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.674 | |
| 3ftq | GNP | Septin-2 | / | 0.674 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.673 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.673 | |
| 1um8 | ADP | ATP-dependent Clp protease ATP-binding subunit ClpX | / | 0.673 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.673 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.673 | |
| 4wpu | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.673 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.672 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.671 | |
| 2ce7 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.671 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.671 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.670 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.670 | |
| 5ftf | ADP | TPR domain protein | / | 0.669 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.668 | |
| 1e32 | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.667 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.667 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.667 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.667 | |
| 1xbt | TTP | Thymidine kinase, cytosolic | 2.7.1.21 | 0.666 | |
| 4rz3 | ADP | Site-determining protein | / | 0.665 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.664 | |
| 2zsa | ADP | Pantothenate kinase | 2.7.1.33 | 0.664 | |
| 3thy | ADP | DNA mismatch repair protein Msh2 | / | 0.663 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.662 | |
| 1dj3 | GDP | Adenylosuccinate synthetase, chloroplastic | / | 0.661 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.661 | |
| 4dsn | GCP | GTPase KRas | / | 0.661 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.661 | |
| 3qi2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.660 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.660 | |
| 4fvr | ATP | Tyrosine-protein kinase JAK2 | / | 0.660 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.659 | |
| 3uk6 | ADP | RuvB-like 2 | 3.6.4.12 | 0.658 | |
| 4i1v | ADP | Dephospho-CoA kinase | / | 0.658 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.658 | |
| 4v02 | ATP | Site-determining protein | / | 0.658 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.657 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.657 | |
| 4yaf | 2AM | NADPH--cytochrome P450 reductase | / | 0.657 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.656 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.655 | |
| 3ll9 | ADP | Isopentenyl phosphate kinase | / | 0.655 | |
| 3nbx | ADP | ATPase RavA | 3.6.3 | 0.655 | |
| 2uz3 | TTP | Thymidine kinase | / | 0.654 | |
| 4iei | ADP | Gene 2 protein | / | 0.653 | |
| 4kod | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.653 | |
| 4lj7 | MNT | Chaperone protein ClpB | / | 0.651 | |
| 4ldj | GDP | GTPase KRas | / | 0.650 | |
| 4ql3 | GDP | GTPase KRas | / | 0.650 |