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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1h73ANPHomoserine kinase2.7.1.39

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1h73ANPHomoserine kinase2.7.1.391.000
1h74ADPHomoserine kinase2.7.1.390.532
1h74AGSHomoserine kinase2.7.1.390.506
4uwmFMN3,6-diketocamphane 1,6 monooxygenase1.14.130.500
2f7x4EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.492
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.487
3te5NAI5'-AMP-activated protein kinase subunit gamma/0.487
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.486
4eagATP5'-AMP-activated protein kinase subunit gamma-1/0.484
3ty3GGGHomoisocitrate dehydrogenase1.1.1.870.481
1xe55FEPlasmepsin-23.4.23.390.480
3iocA5DPantothenate synthetase6.3.2.10.480
3kjiADPCO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC/0.480
3q43D66M1 family aminopeptidase3.4.110.480
4ipw1G7Mycocyclosin synthase1.14.21.90.480
4yaoFMNNADPH--cytochrome P450 reductase/0.479
1icsFMN12-oxophytodienoate reductase 11.3.1.420.478
2p83MR0Beta-secretase 13.4.23.460.478
3b70NAPEnoyl reductase LovC10.478
4g7gVFVLanosterol 14-alpha-demethylase/0.478
4kbyC2EStimulator of interferon genes protein/0.478
2rcyNAPPyrroline-5-carboxylate reductase/0.477
3tjzGNPADP-ribosylation factor 1/0.476
1fwkADPHomoserine kinase2.7.1.390.473
1yqdNAPSinapyl alcohol dehydrogenase/0.473
3ieuGDPGTPase Era/0.473
4g3jVNTLanosterol 14-alpha-demethylase/0.473
2ahrNAPPyrroline-5-carboxylate reductase/0.472
2qs3UBEGlutamate receptor ionotropic, kainate 1/0.472
3ohh3HHBeta-secretase 13.4.23.460.472
4ambDUDPutative glycosyl transferase/0.472
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.472
1w6hTITPlasmepsin-23.4.23.390.471
1qrpHH0Pepsin A-43.4.23.10.470
2dftADPShikimate kinase2.7.1.710.470
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.470
3gqvNAPEnoyl reductase LovC10.470
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.470
1hdcCBO3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.469
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.468
4bcaFADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.468
2c1bCQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.467
4m83ERYOleandomycin glycosyltransferase2.4.10.467
5d3qGDPDynamin-13.6.5.50.467
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.466
3imgBZ2Pantothenate synthetase6.3.2.10.466
4gavFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.466
4gxs0YSGlutamate receptor 2/0.466
1e5qNDPSaccharopine dehydrogenase [NADP(+), L-glutamate-forming]1.5.1.100.465
2xhd7T9Glutamate receptor 2/0.465
4q72FADBifunctional protein PutA/0.465
2a92NAIL-lactate dehydrogenase/0.464
2g226IGRenin3.4.23.150.464
2gmhFADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial1.5.5.10.464
2nruT12Interleukin-1 receptor-associated kinase 42.7.11.10.464
2ou2ACOHistone acetyltransferase KAT5/0.464
2xx91NFGlutamate receptor 2/0.464
1nzdUPGDNA beta-glucosyltransferase/0.463
1zmdNAIDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.463
2fw3BUICarnitine O-palmitoyltransferase 2, mitochondrial2.3.1.210.463
3lqfNADGalactitol dehydrogenase/0.463
3t4nADP5'-AMP-activated protein kinase subunit gamma/0.463
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.463
4bfvZVVPantothenate kinase2.7.1.330.463
4egbNADdTDP-glucose 4,6-dehydratase/0.463
4g9kFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.463
1lbcCYZGlutamate receptor 2/0.462
2givACOHistone acetyltransferase KAT8/0.462
3gw9VNILanosterol 14-alpha-demethylase/0.462
2oapANPType II secretion system protein (GspE-2)/0.461
2w3bNDPDihydrofolate reductase1.5.1.30.461
2yyiFAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component1.14.14.90.461
3mvqNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.30.461
4fse0VABeta-secretase 13.4.23.460.460
1h72ANPHomoserine kinase2.7.1.390.459
1psa0ZLPepsin A3.4.23.10.459
1rneC60Renin3.4.23.150.459
1z7yAA5Cysteine synthase 12.5.1.470.459
3ukoNADAlcohol dehydrogenase class-3/0.459
1f8fNADBenzyl alcohol dehydrogenase/0.458
2y0mACOHistone acetyltransferase KAT8/0.458
3kgcLY7Glutamate receptor 2/0.458
4a83DXCMajor pollen allergen Bet v 1-A/0.458
1kkq471Peroxisome proliferator-activated receptor alpha/0.457
1x1aSAMC-20 methyltransferase/0.457
2g1s4IGRenin3.4.23.150.457
2ohvNHLGlutamate racemase/0.457
3kpbSAMUncharacterized protein MJ0100/0.457
3nsh957Beta-secretase 13.4.23.460.457
4dbzNDPPutative ketoacyl reductase1.3.10.457
4i0i957Beta-secretase 13.4.23.460.457
4xguADPPutative pachytene checkpoint protein 2/0.457
1mj9COAHistone acetyltransferase ESA1/0.456
2b37NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.456
2b3dFADModulator of drug activity B/0.456
2gjlFMNNitronate monooxygenase1.13.12.160.456
2iko7IGRenin3.4.23.150.456
2iqgF2IBeta-secretase 13.4.23.460.456
3ijoB4DGlutamate receptor 2/0.456
3vqhIQBcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.456
4cdmFO1Deoxyribodipyrimidine photolyase/0.456
2i4pDRHPeroxisome proliferator-activated receptor gamma/0.455
2uxoTACHTH-type transcriptional regulator TtgR/0.455
2vkvTDCTetracycline repressor protein class D/0.455
3cic316Beta-secretase 13.4.23.460.455
3lpkZ76Beta-secretase 13.4.23.460.455
3wqmB29Diterpene synthase3.1.7.80.455
3zcnATPAdenosine monophosphate-protein transferase SoFic2.7.7.n10.455
4hmz18TdTDP-4-dehydro-6-deoxyglucose 3-epimerase5.1.3.270.455
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.454
1lwiNAP3-alpha-hydroxysteroid dehydrogenase1.1.1.500.454
2c27ACOMycothiol acetyltransferase2.3.1.1890.454
3b6zCO7Enoyl reductase LovC10.454
3i5zZ48Mitogen-activated protein kinase 12.7.11.240.454
3lpiZ74Beta-secretase 13.4.23.460.454
3otwCOAPhosphopantetheine adenylyltransferase/0.454
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.454
4frkDWDBeta-secretase 13.4.23.460.454
4nd3NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.454
4nwzFADFAD-dependent pyridine nucleotide-disulfide oxidoreductase/0.454
4rnuFMNNADPH dehydrogenase 11.6.99.10.454
1dirNADDihydropteridine reductase1.5.1.340.453
1t2cNAIL-lactate dehydrogenase1.1.1.270.453
1txtCAAHMG-CoA synthase/0.453
1yb5NAPQuinone oxidoreductase1.6.5.50.453
2g1o2IGRenin3.4.23.150.453
2ojtUBAGlutamate receptor ionotropic, kainate 1/0.453
3ge1ADPGlycerol kinase/0.453
3hyoADPPyridoxal kinase/0.453
3kb1ADPIron-sulfur cluster carrier protein/0.453
4eudCOASuccinyl-CoA:acetate CoA-transferase/0.453
4hbm0Y7E3 ubiquitin-protein ligase Mdm26.3.20.453
1ja0FMNNADPH--cytochrome P450 reductase/0.452
2b4rAESGlyceraldehyde-3-phosphate dehydrogenase/0.452
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.452
2iyfERYOleandomycin glycosyltransferase2.4.10.452
2po7CHDFerrochelatase, mitochondrial4.99.1.10.452
3dgaNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.452
3fstFAD5,10-methylenetetrahydrofolate reductase1.5.1.200.452
3lpjZ75Beta-secretase 13.4.23.460.452
3oibFDAPutative acyl-CoA dehydrogenase/0.452
3qt62P0Mevalonate diphosphate decarboxylase/0.452
3to6LYS_CMCHistone acetyltransferase ESA1/0.452
4euaCOASuccinyl-CoA:acetate CoA-transferase/0.452
4g6gFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.452
1e3eNAIAlcohol dehydrogenase 41.1.1.10.451
1tehNADAlcohol dehydrogenase class-31.1.1.10.451
2a1hGBNBranched-chain-amino-acid aminotransferase, mitochondrial2.6.1.420.451
3kjrNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.451
3p8z36AGenome polyprotein2.1.1.560.451
3zbrNAP2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.451
4bb3KKAIsopenicillin N synthase1.21.3.10.451
1fxsNAPGDP-L-fucose synthase/0.450
1glfADPGlycerol kinase/0.450
1p0hCOAMycothiol acetyltransferase2.3.1.1890.450
3eksCY9Actin-5C/0.450
3gfbNADL-threonine 3-dehydrogenase/0.450
3h3t16HCollagen type IV alpha-3-binding protein/0.450
3wycNAPMeso-diaminopimelate D-dehydrogenase1.4.1.160.450
4q71FADBifunctional protein PutA/0.450
1f8wFADNADH peroxidase1.11.1.10.449
1fm4DXCMajor pollen allergen Bet v 1-L/0.449
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.449
1mjbACOHistone acetyltransferase ESA1/0.449
2q1sNAIPutative nucleotide sugar epimerase/ dehydratase/0.449
2q85973UDP-N-acetylenolpyruvoylglucosamine reductase1.3.1.980.449
3f03FMNPentaerythritol tetranitrate reductase/0.449
3jv7NADSecondary alcohol dehydrogenase/0.449
3mpiFADGlutaryl-CoA dehydrogenase1.3.99.320.449
3r7kFDAProbable acyl CoA dehydrogenase/0.449
3rpeFADPutative modulator of drug activity/0.449
4c4oNADSADH/0.449
4dfg0JVGag-Pol polyprotein3.4.23.160.449
4du82P0Mevalonate diphosphate decarboxylase/0.449
4eakATP5'-AMP-activated protein kinase subunit gamma-1/0.449
4hp8NAP2-deoxy-D-gluconate 3-dehydrogenase/0.449
1nzfUPGDNA beta-glucosyltransferase/0.448
2cntCOARibosomal-protein-alanine acetyltransferase/0.448
2hydADPPutative multidrug export ATP-binding/permease protein SAV18663.6.30.448
2ikuLIYRenin3.4.23.150.448
2jdtI5ScAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.448
3flkNAITartrate dehydrogenase/decarboxylase1.1.1.930.448
4a802ANMajor pollen allergen Bet v 1-A/0.448
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.448
4df2FMNNADPH dehydrogenase/0.448
4gdy0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.448
1rfuADPPyridoxal kinase2.7.1.350.447
2ejvNADL-threonine 3-dehydrogenase/0.447
2o1sTDP1-deoxy-D-xylulose-5-phosphate synthase2.2.1.70.447
3atzFMNProstaglandin F2a synthase/0.447
4a862ANMajor pollen allergen Bet v 1-A/0.447
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.447
4ktoFADPutative isovaleryl-CoA dehydrogenase protein/0.447
4ure1PSCyclohexanol dehydrogenase/0.447
1e3lNADAlcohol dehydrogenase 41.1.1.10.446
2he5NDPAldo-keto reductase family 1 member C211.1.10.446
2qimZEAClass 10 plant pathogenesis-related protein/0.446
2yxuATPPyridoxal kinase2.7.1.350.446
3cib314Beta-secretase 13.4.23.460.446
3dm6757Beta-secretase 13.4.23.460.446
3gegNADShort-chain dehydrogenase/reductase SDR/0.446
3gu83GUDeath-associated protein kinase 12.7.11.10.446
3kjsNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.446
3nxxNDPDihydrofolate reductase1.5.1.30.446
3oetNADErythronate-4-phosphate dehydrogenase/0.446
3r96ACOMccE protein/0.446
4i1iNADMalate dehydrogenase/0.446
4loi1YCStimulator of interferon genes protein/0.446
4wzhFMNDihydroorotate dehydrogenase (fumarate)/0.446
1bim0QBRenin3.4.23.150.445
1bwsNDPGDP-L-fucose synthase/0.445
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.445
2hizLIJBeta-secretase 13.4.23.460.445
2rhgIGPTryptophan synthase alpha chain/0.445
2zsaADPPantothenate kinase2.7.1.330.445
3fktSIIBeta-secretase 13.4.23.460.445
3iqiASN_GLU_ASN_ILECysteine synthase2.5.1.470.445
3k5c0BIBeta-secretase 13.4.23.460.445
4bfzZVZPantothenate kinase2.7.1.330.445
4fsl0VBBeta-secretase 13.4.23.460.445
4fw8NAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.445
4k6fNAPPutative Acetoacetyl-CoA reductase/0.445
4wriOKAOkadaic acid binding protein 2-alpha/0.445
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.444
2vbdV10Isopenicillin N synthase1.21.3.10.444
2zjmF1MBeta-secretase 13.4.23.460.444
4d89BXDBeta-secretase 13.4.23.460.444
4gdcNDPUDP-galactopyranose mutase/0.444
1icpFMN12-oxophytodienoate reductase 11.3.1.420.443
1jtvTESEstradiol 17-beta-dehydrogenase 11.1.1.620.443
1tqf32PBeta-secretase 13.4.23.460.443
2b4tAESGlyceraldehyde-3-phosphate dehydrogenase/0.443
2c20NADUDP-glucose 4-epimerase/0.443
2g247IGRenin3.4.23.150.443
2p5uNADUDP-glucose 4-epimerase/0.443
2x8hFADThioredoxin glutathione reductase/0.443
3em0CHDFatty acid-binding protein 6, ileal (gastrotropin)/0.443
3q9bB3NAcetylpolyamine amidohydrolase/0.443
3v2uATPProtein GAL3/0.443
4eu9COASuccinyl-CoA:acetate CoA-transferase/0.443
4f4dCHDFerrochelatase, mitochondrial4.99.1.10.443
4is3NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 21.17.98.10.443
4j33FADKynurenine 3-monooxygenase/0.443
4zowCLMMultidrug transporter MdfA/0.443
1i7pFADNADH-cytochrome b5 reductase 31.6.2.20.442
1kp3ATPArgininosuccinate synthase6.3.4.50.442
1n4pCYS_VAL_ILE_LEU_GERGeranylgeranyl transferase type-1 subunit beta2.5.1.590.442
1o9bNAIQuinate/shikimate dehydrogenase/0.442
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.442
2fy4COACholine O-acetyltransferase2.3.1.60.442
2i4qUA4Renin3.4.23.150.442
2y3rTRKTamL/0.442
3d4pNADL-lactate dehydrogenase 11.1.1.270.442
3etdNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.30.442
3iqhTYR_ASP_ILECysteine synthase2.5.1.470.442
3oixFMNDihydroorotate dehydrogenase/0.442
4bc7FADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.442
4h8aNAIUreidoglycolate dehydrogenase (NAD(+))1.1.1.3500.442
4jnkNAIL-lactate dehydrogenase A chain1.1.1.270.442
4k8s1QTBeta-secretase 13.4.23.460.442
1g1aNADdTDP-glucose 4,6-dehydratase/0.441
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.441
1nuuNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.441
2ebaFADPutative glutaryl-CoA dehydrogenase/0.441
2fn7NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.441
2ii6C5PAlpha-2,3/2,6-sialyltransferase/sialidase/0.441
2vn0TDZCytochrome P450 2C8/0.441
2vnaNAPProstaglandin reductase 21.3.1.480.441
3tr05GPGuanylate kinase/0.441
3vyeVYERenin3.4.23.150.441
4bbyFADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.441
4yvz3ATDNA integrity scanning protein DisA/0.441
5c41ACPRibokinase/0.441
1nvtNAPShikimate dehydrogenase (NADP(+))/0.440
1p0hACOMycothiol acetyltransferase2.3.1.1890.440
1zgyBRLPeroxisome proliferator-activated receptor gamma/0.440
2g76NADD-3-phosphoglycerate dehydrogenase1.1.1.950.440
2zvcSAHPrecorrin-3 C17-methyltransferase/0.440
3h3r14HCollagen type IV alpha-3-binding protein/0.440
3ixj586Beta-secretase 13.4.23.460.440
3tscNADUncharacterized protein/0.440
3uylTYDProbable NDP-rhamnosyltransferase/0.440
3zw9NADPeroxisomal bifunctional enzyme1.1.1.350.440
4jayNAPUDP-N-acetylenolpyruvoylglucosamine reductase/0.440
4v2gITCTetracycline repressor protein class D/0.440
4xiwAZMCarbonic anhydrase, alpha type/0.440
4xq9NADHomospermidine synthase2.5.1.440.440
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.440