3.000 Å
X-ray
2006-08-05
| Name: | Putative multidrug export ATP-binding/permease protein SAV1866 |
|---|---|
| ID: | Y1866_STAAM |
| AC: | Q99T13 |
| Organism: | Staphylococcus aureus |
| Reign: | Bacteria |
| TaxID: | 158878 |
| EC Number: | 3.6.3 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 70 % |
| B | 30 % |
| B-Factor: | 84.047 |
|---|---|
| Number of residues: | 37 |
| Including | |
| Standard Amino Acids: | 37 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.568 | 1937.250 |
| % Hydrophobic | % Polar |
|---|---|
| 41.81 | 58.19 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 62.85 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 100.523 | 53.2037 | 168.205 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C1' | CE1 | TYR- 349 | 3.6 | 0 | Hydrophobic |
| DuAr | DuAr | TYR- 349 | 3.65 | 0 | Aromatic Face/Face |
| C4' | CD1 | ILE- 356 | 3.82 | 0 | Hydrophobic |
| C1' | CD1 | ILE- 356 | 3.33 | 0 | Hydrophobic |
| O3B | N | GLY- 377 | 2.58 | 152.24 | H-Bond (Protein Donor) |
| O3B | N | GLY- 378 | 3.39 | 124.22 | H-Bond (Protein Donor) |
| O2B | N | GLY- 379 | 3.47 | 150.31 | H-Bond (Protein Donor) |
| O2B | NZ | LYS- 380 | 3.59 | 0 | Ionic (Protein Cationic) |
| O1B | N | SER- 381 | 3.36 | 147.35 | H-Bond (Protein Donor) |
| O2B | N | SER- 381 | 3.22 | 149.55 | H-Bond (Protein Donor) |
| O5' | OG1 | THR- 382 | 3.36 | 134.33 | H-Bond (Protein Donor) |
| C5' | CB | SER- 479 | 4.4 | 0 | Hydrophobic |