scPDB - 2f7x entry

Protein Data Bank Entry:

PDB ID : 2f7x

Resolution :1.900 Å

Experimental Method : X-ray

Deposition Date : 2005-12-01

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	cAMP-dependent protein kinase catalytic subunit alpha
ID:	KAPCA_BOVIN
AC:	P00517
Organism:	Bos taurus
Reign:	Eukaryota
TaxID:	9913
EC Number:	2.7.11.11

Chains:

Chain Name:	Percentage of Residues within binding site
E	89 %
I	11 %

Ligand binding site composition:

B-Factor:	21.551
Number of residues:	40
Including
Standard Amino Acids:	37
Non Standard Amino Acids:	0
Water Molecules:	3
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
1.316	745.875

% Hydrophobic	% Polar
51.58	48.42
According to VolSite

Ligand :

HET Code:	4EA
Formula:	C23H23N4O
Molecular weight:	371.455 g/mol
DrugBank ID:	DB07107
Buried Surface Area:	60.22 %
Polar Surface area:	78.44 Å2

Number of
H-Bond Acceptors:	3
H-Bond Donors:	2
Rings:	4
Aromatic rings:	4
Anionic atoms:	0
Cationic atoms:	1
Rule of Five Violation:	0
Rotatable Bonds:	7

Mass center Coordinates

X	Y	Z
10.8743	10.5123	1.69457

Binding mode :

What is Poseview ?

2D View
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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C7	CD1	LEU- 49	4.36	0	Hydrophobic	false
C3	CG1	VAL- 57	4.39	0	Hydrophobic	false
C15	CG2	VAL- 57	4.31	0	Hydrophobic	false
C21	CG2	VAL- 57	3.79	0	Hydrophobic	false
C4	CB	ALA- 70	3.64	0	Hydrophobic	false
N3	NZ	LYS- 72	2.94	147.42	H-Bond (Protein Donor)	false
C15	CG	LYS- 72	4.21	0	Hydrophobic	false
C10	CD1	LEU- 74	3.69	0	Hydrophobic	false
C4	SD	MET- 120	4.26	0	Hydrophobic	false
N1	N	VAL- 123	2.94	159.4	H-Bond (Protein Donor)	false
C3	CD1	LEU- 173	3.52	0	Hydrophobic	false
C20	CG2	THR- 183	3.85	0	Hydrophobic	false
C22	CB	ASP- 184	4.39	0	Hydrophobic	false
N4	O	HOH- 358	2.86	146.28	H-Bond (Ligand Donor)	false
N4	O	HOH- 412	2.87	166.45	H-Bond (Ligand Donor)	false