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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2f7x 4EA cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2f7x 4EAcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.962
2jds L20cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.777
2ojf 4PYcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.771
2f7z 6EAcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.705
2jdv L20cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.697
2c1b CQPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.682
3dne LL1cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.676
2uzu L20cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.671
2uzw SS4cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.670
3l9l L9LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.663
2c1a I5ScAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.662
1xh5 R68cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.661
2gnl H52cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.657
2x6d X6DAurora kinase A 2.7.11.1 0.656
2gnh H52cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.651