2.620 Å
X-ray
2012-03-08
| Name: | Putative glycosyl transferase |
|---|---|
| ID: | Q9RN61_STRNO |
| AC: | Q9RN61 |
| Organism: | Streptomyces nogalater |
| Reign: | Bacteria |
| TaxID: | 38314 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 31.781 |
|---|---|
| Number of residues: | 34 |
| Including | |
| Standard Amino Acids: | 34 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.583 | 1856.250 |
| % Hydrophobic | % Polar |
|---|---|
| 45.64 | 54.36 |
| According to VolSite | |

| HET Code: | DUD |
|---|---|
| Formula: | C9H11N2O11P2 |
| Molecular weight: | 385.138 g/mol |
| DrugBank ID: | DB03413 |
| Buried Surface Area: | 62.87 % |
| Polar Surface area: | 220.27 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 11 |
| H-Bond Donors: | 2 |
| Rings: | 2 |
| Aromatic rings: | 0 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -40.1968 | 25.3375 | -21.1861 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C4' | CD1 | LEU- 27 | 4.38 | 0 | Hydrophobic |
| O3' | ND2 | ASN- 212 | 3.23 | 136.11 | H-Bond (Protein Donor) |
| C1' | CB | ASN- 212 | 4.25 | 0 | Hydrophobic |
| O1B | OG | SER- 236 | 3.44 | 161.87 | H-Bond (Protein Donor) |
| N3 | O | ILE- 286 | 2.53 | 168.33 | H-Bond (Ligand Donor) |
| O4 | N | ILE- 286 | 3.47 | 159.75 | H-Bond (Protein Donor) |
| O2 | N | LEU- 288 | 2.79 | 132.04 | H-Bond (Protein Donor) |
| C2' | CB | LEU- 288 | 3.81 | 0 | Hydrophobic |
| O1A | NE2 | HIS- 301 | 3.08 | 125.46 | H-Bond (Protein Donor) |
| O2B | NE2 | HIS- 301 | 3.16 | 158.57 | H-Bond (Protein Donor) |
| O2A | N | GLY- 305 | 2.65 | 141.43 | H-Bond (Protein Donor) |
| O5' | OG1 | THR- 306 | 3.35 | 126.45 | H-Bond (Protein Donor) |
| O1A | OG1 | THR- 306 | 3.4 | 174.82 | H-Bond (Protein Donor) |