2.000 Å
X-ray
2009-08-04
| Name: | Glutamate receptor 2 |
|---|---|
| ID: | GRIA2_RAT |
| AC: | P19491 |
| Organism: | Rattus norvegicus |
| Reign: | Eukaryota |
| TaxID: | 10116 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 36 % |
| E | 64 % |
| B-Factor: | 28.013 |
|---|---|
| Number of residues: | 35 |
| Including | |
| Standard Amino Acids: | 33 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.368 | 1147.500 |
| % Hydrophobic | % Polar |
|---|---|
| 45.88 | 54.12 |
| According to VolSite | |

| HET Code: | B4D |
|---|---|
| Formula: | C11H14ClN3O4S3 |
| Molecular weight: | 383.895 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 63.17 % |
| Polar Surface area: | 160.41 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 3 |
| Rings: | 2 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| -5.07364 | 52.1325 | -20.9215 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C03 | CB | ILE- 92 | 3.21 | 0 | Hydrophobic |
| C03 | CG | LYS- 104 | 4.23 | 0 | Hydrophobic |
| S04 | CB | LYS- 104 | 4.48 | 0 | Hydrophobic |
| S04 | CG | PRO- 105 | 4.43 | 0 | Hydrophobic |
| N22 | O | PRO- 105 | 2.94 | 174.62 | H-Bond (Ligand Donor) |
| O15 | N | SER- 108 | 3.33 | 173.73 | H-Bond (Protein Donor) |
| N14 | OG | SER- 217 | 3.44 | 123.88 | H-Bond (Ligand Donor) |
| C12 | CB | SER- 217 | 3.97 | 0 | Hydrophobic |
| C05 | CB | LYS- 218 | 4.42 | 0 | Hydrophobic |
| C03 | CD2 | LEU- 239 | 3.84 | 0 | Hydrophobic |
| C05 | CB | SER- 242 | 4.29 | 0 | Hydrophobic |
| N07 | OG | SER- 242 | 2.84 | 128.13 | H-Bond (Ligand Donor) |
| C09 | CD1 | LEU- 247 | 3.75 | 0 | Hydrophobic |
| CL11 | CB | LEU- 247 | 3.58 | 0 | Hydrophobic |
| CL11 | CB | ASP- 248 | 3.8 | 0 | Hydrophobic |