scPDB - 3to6 entry

Protein Data Bank Entry:

PDB ID : 3to6

Resolution :2.100 Å

Experimental Method : X-ray

Deposition Date : 2011-09-04

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Histone acetyltransferase ESA1
ID:	ESA1_YEAST
AC:	Q08649
Organism:	Saccharomyces cerevisiae
Reign:	Eukaryota
TaxID:	559292
EC Number:	/

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	17.264
Number of residues:	48
Including
Standard Amino Acids:	45
Non Standard Amino Acids:	1
Water Molecules:	2
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
1.251	1026.000

% Hydrophobic	% Polar
40.79	59.21
According to VolSite

Ligand :

HET Code:	LYS_CMC
Formula:	C29H47N9O18P3S
Molecular weight:	934.719 g/mol
DrugBank ID:	-
Buried Surface Area:	53.26 %
Polar Surface area:	486.42 Å2

Number of
H-Bond Acceptors:	23
H-Bond Donors:	7
Rings:	3
Aromatic rings:	2
Anionic atoms:	4
Cationic atoms:	1
Rule of Five Violation:	3
Rotatable Bonds:	27

Mass center Coordinates

X	Y	Z
-6.48508	1.95193	19.8904

Binding mode :

What is Poseview ?

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3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
O5A	O	HOH- 4	2.81	161.09	H-Bond (Protein Donor)	false
CD	CD2	LEU- 259	3.71	0	Hydrophobic	false
C6P	CD2	LEU- 259	3.53	0	Hydrophobic	false
C2P	CD2	LEU- 259	4.11	0	Hydrophobic	false
CG	CG	ALY- 262	4.2	0	Hydrophobic	false
CB	CB	CYS- 304	4.25	0	Hydrophobic	false
CEP	CG1	ILE- 305	4.45	0	Hydrophobic	false
C1	CG2	ILE- 305	3.57	0	Hydrophobic	false
N4P	O	ILE- 305	2.73	155.81	H-Bond (Ligand Donor)	false
C6P	CD1	LEU- 306	3.76	0	Hydrophobic	false
O5A	OG1	THR- 307	2.99	154.03	H-Bond (Protein Donor)	false
O9P	N	THR- 307	2.88	158.75	H-Bond (Protein Donor)	false
CEP	CB	THR- 307	4.34	0	Hydrophobic	false
CAP	CG	GLN- 312	4.31	0	Hydrophobic	false
C1B	CB	ARG- 313	4.4	0	Hydrophobic	false
C4B	CG	ARG- 313	4.28	0	Hydrophobic	false
O7A	CZ	ARG- 313	3.66	0	Ionic (Protein Cationic)	false
O9A	CZ	ARG- 313	3.83	0	Ionic (Protein Cationic)	false
O4A	N	ARG- 313	2.92	164.3	H-Bond (Protein Donor)	false
O2A	N	GLY- 315	2.9	149.24	H-Bond (Protein Donor)	false
O5A	N	GLY- 317	2.97	141.66	H-Bond (Protein Donor)	false
O1A	N	LYS- 318	3.13	147.17	H-Bond (Protein Donor)	false
S1P	CB	LEU- 341	3.92	0	Hydrophobic	false
C1	CG	LEU- 341	4.43	0	Hydrophobic	false
O5P	OG	SER- 342	2.75	161.2	H-Bond (Protein Donor)	false
C2P	CB	SER- 342	4.18	0	Hydrophobic	false
CDP	CB	LEU- 344	4.12	0	Hydrophobic	false
CCP	CB	SER- 348	4.44	0	Hydrophobic	false
CDP	CB	SER- 348	4.44	0	Hydrophobic	false