Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Protein Data Bank Entry:

2uxo

2.700 Å

X-ray

2007-03-28

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:HTH-type transcriptional regulator TtgR
ID:TTGR_PSEPT
AC:Q9AIU0
Organism:Pseudomonas putida
Reign:Bacteria
TaxID:1196325
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
B100 %


Ligand binding site composition:

B-Factor:42.779
Number of residues:33
Including
Standard Amino Acids: 32
Non Standard Amino Acids: 0
Water Molecules: 1
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.4881188.000

% Hydrophobic% Polar
59.3840.63
According to VolSite

Ligand :
2uxo_1 Structure
HET Code: TAC
Formula: C22H22N2O8
Molecular weight: 442.419 g/mol
DrugBank ID: DB00759
Buried Surface Area:54.63 %
Polar Surface area: 191.3 Å2
Number of
H-Bond Acceptors: 8
H-Bond Donors: 4
Rings: 4
Aromatic rings: 1
Anionic atoms: 3
Cationic atoms: 1
Rule of Five Violation: 0
Rotatable Bonds: 2

Mass center Coordinates

XYZ
0.85571934.777613.3327


Binding mode :
What is Poseview ?
  • 2D View
  • 3D View
Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C8CGMET- 894.40Hydrophobic
C62CD2LEU- 923.410Hydrophobic
C7CD2LEU- 923.620Hydrophobic
C10CD2LEU- 934.260Hydrophobic
C41CG1VAL- 963.840Hydrophobic
C62CG2VAL- 964.420Hydrophobic
C51CG2VAL- 963.860Hydrophobic
C6SGCYS- 1374.240Hydrophobic
C8CD1ILE- 1413.640Hydrophobic
O1COHOH- 20423.46179.96H-Bond
(Protein Donor)