1.550 Å
X-ray
2009-10-28
| Name: | Glutamate receptor 2 |
|---|---|
| ID: | GRIA2_RAT |
| AC: | P19491 |
| Organism: | Rattus norvegicus |
| Reign: | Eukaryota |
| TaxID: | 10116 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 54 % |
| B | 46 % |
| B-Factor: | 11.932 |
|---|---|
| Number of residues: | 37 |
| Including | |
| Standard Amino Acids: | 37 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.099 | 1596.375 |
| % Hydrophobic | % Polar |
|---|---|
| 47.15 | 52.85 |
| According to VolSite | |

| HET Code: | LY7 |
|---|---|
| Formula: | C19H22N2O2S |
| Molecular weight: | 342.455 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 71.28 % |
| Polar Surface area: | 78.34 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 3 |
| H-Bond Donors: | 1 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 16.0766 | 47.2499 | -2.27283 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CAB | CG2 | ILE- 92 | 3.93 | 0 | Hydrophobic |
| CAA | CB | LYS- 104 | 4.08 | 0 | Hydrophobic |
| CAJ | CG | PRO- 105 | 4.16 | 0 | Hydrophobic |
| CAL | CG | PRO- 105 | 3.91 | 0 | Hydrophobic |
| CAK | CB | PRO- 105 | 3.95 | 0 | Hydrophobic |
| CAM | CG | PRO- 105 | 3.47 | 0 | Hydrophobic |
| NAQ | O | PRO- 105 | 2.8 | 149.75 | H-Bond (Ligand Donor) |
| CAK | CB | SER- 108 | 4.15 | 0 | Hydrophobic |
| CAO | CB | SER- 108 | 3.76 | 0 | Hydrophobic |
| CAC | CB | SER- 217 | 4.34 | 0 | Hydrophobic |
| CAR | CB | SER- 217 | 3.97 | 0 | Hydrophobic |
| CAB | CB | LYS- 218 | 4.29 | 0 | Hydrophobic |
| CAA | CG1 | VAL- 238 | 4.21 | 0 | Hydrophobic |
| CAB | CD2 | LEU- 239 | 3.66 | 0 | Hydrophobic |
| NAD | OG | SER- 242 | 3.06 | 161.05 | H-Bond (Protein Donor) |
| CAA | CB | SER- 242 | 3.67 | 0 | Hydrophobic |