1.350 Å
X-ray
2007-07-05
Name: | Class 10 plant pathogenesis-related protein |
---|---|
ID: | Q9LLQ2_LUPLU |
AC: | Q9LLQ2 |
Organism: | Lupinus luteus |
Reign: | Eukaryota |
TaxID: | 3873 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 18.473 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 21 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.155 | 1495.125 |
% Hydrophobic | % Polar |
---|---|
56.21 | 43.79 |
According to VolSite |
HET Code: | ZEA |
---|---|
Formula: | C10H13N5O |
Molecular weight: | 219.243 g/mol |
DrugBank ID: | DB11337 |
Buried Surface Area: | 53.72 % |
Polar Surface area: | 86.72 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 3 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
60.5791 | 44.0174 | 4.564 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C11 | CD1 | ILE- 37 | 4.11 | 0 | Hydrophobic |
C15 | CD2 | LEU- 55 | 4.31 | 0 | Hydrophobic |
C11 | CD2 | LEU- 55 | 3.97 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 57 | 3.6 | 0 | Aromatic Face/Face |
N7 | OE2 | GLU- 59 | 2.71 | 172.32 | H-Bond (Ligand Donor) |
C14 | CG | PHE- 142 | 3.94 | 0 | Hydrophobic |
C15 | CE1 | PHE- 142 | 4.05 | 0 | Hydrophobic |
O16 | O | HOH- 173 | 2.93 | 179.96 | H-Bond (Protein Donor) |