1.900 Å
X-ray
2008-12-17
Name: | Beta-secretase 1 |
---|---|
ID: | BACE1_HUMAN |
AC: | P56817 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 3.4.23.46 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 29.943 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.829 | 789.750 |
% Hydrophobic | % Polar |
---|---|
37.18 | 62.82 |
According to VolSite |
HET Code: | SII |
---|---|
Formula: | C28H36FN5O2 |
Molecular weight: | 493.616 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 59.89 % |
Polar Surface area: | 79.84 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 4 |
Rings: | 5 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 2 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
30.5649 | 39.9061 | -0.156639 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5 | CD2 | LEU- 50 | 3.89 | 0 | Hydrophobic |
C10 | CB | TYR- 91 | 3.6 | 0 | Hydrophobic |
F1 | CD2 | TYR- 91 | 4.05 | 0 | Hydrophobic |
C18 | CD1 | TYR- 91 | 3.56 | 0 | Hydrophobic |
C10 | CD2 | TYR- 91 | 3.49 | 0 | Hydrophobic |
O2 | N | GLN- 93 | 2.99 | 151.69 | H-Bond (Protein Donor) |
C14 | CB | GLN- 93 | 3.49 | 0 | Hydrophobic |
F1 | CD1 | PHE- 128 | 3.65 | 0 | Hydrophobic |
N1 | O | PHE- 128 | 2.58 | 164.62 | H-Bond (Ligand Donor) |
C3 | CD1 | ILE- 130 | 4.02 | 0 | Hydrophobic |
C9 | CG1 | ILE- 130 | 3.41 | 0 | Hydrophobic |
C23 | CZ | TYR- 218 | 3.74 | 0 | Hydrophobic |
C27 | CD1 | ILE- 246 | 3.88 | 0 | Hydrophobic |
C28 | CB | THR- 349 | 3.88 | 0 | Hydrophobic |
C27 | CG2 | VAL- 352 | 3.7 | 0 | Hydrophobic |
N2 | O | HOH- 433 | 2.74 | 162.19 | H-Bond (Ligand Donor) |