scPDB - 2hiz entry

Protein Data Bank Entry:

PDB ID : 2hiz

Resolution :2.500 Å

Experimental Method : X-ray

Deposition Date : 2006-06-29

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Beta-secretase 1
ID:	BACE1_HUMAN
AC:	P56817
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	3.4.23.46

Chains:

Chain Name:	Percentage of Residues within binding site
C	100 %

Ligand binding site composition:

B-Factor:	34.945
Number of residues:	40
Including
Standard Amino Acids:	38
Non Standard Amino Acids:	0
Water Molecules:	2
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.783	762.750

% Hydrophobic	% Polar
31.86	68.14
According to VolSite

Ligand :

HET Code:	LIJ
Formula:	C36H50N3O7S
Molecular weight:	668.863 g/mol
DrugBank ID:	-
Buried Surface Area:	53.69 %
Polar Surface area:	156.01 Å2

Number of
H-Bond Acceptors:	7
H-Bond Donors:	4
Rings:	3
Aromatic rings:	3
Anionic atoms:	0
Cationic atoms:	1
Rule of Five Violation:	1
Rotatable Bonds:	21

Mass center Coordinates

X	Y	Z
-42.5109	11.1	100.29

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C1	CD1	LEU- 30	3.45	0	Hydrophobic	false
C17	CD1	LEU- 30	3.79	0	Hydrophobic	false
O21	OD1	ASP- 32	3.42	142.75	H-Bond (Ligand Donor)	false
N23	O	GLY- 34	2.81	149.08	H-Bond (Ligand Donor)	false
C31	CB	SER- 35	3.65	0	Hydrophobic	false
C20	CB	TYR- 71	4.05	0	Hydrophobic	false
C21	CD1	TYR- 71	4.03	0	Hydrophobic	false
C14	CD1	TYR- 71	4.08	0	Hydrophobic	false
C30	CB	THR- 72	4.43	0	Hydrophobic	false
C44	CG2	THR- 72	3.64	0	Hydrophobic	false
O11	N	GLN- 73	3.39	145.6	H-Bond (Protein Donor)	false
C49	CG	GLN- 73	3.75	0	Hydrophobic	false
C50	CB	GLN- 73	3.24	0	Hydrophobic	false
C5	CD1	ILE- 110	4.47	0	Hydrophobic	false
C3	CD1	ILE- 110	4.36	0	Hydrophobic	false
C15	CD1	ILE- 118	4.04	0	Hydrophobic	false
C31	CD1	ILE- 126	3.93	0	Hydrophobic	false
N23	OD2	ASP- 228	2.84	150.1	H-Bond (Ligand Donor)	false
N23	OD2	ASP- 228	2.84	0	Ionic (Ligand Cationic)	false
N12	O	GLY- 230	3.16	160.29	H-Bond (Ligand Donor)	false
C7	CB	THR- 232	4.4	0	Hydrophobic	false
O8B	N	THR- 232	3.13	163.2	H-Bond (Protein Donor)	false