2.500 Å
X-ray
2005-09-26
Name: | Glyceraldehyde-3-phosphate dehydrogenase |
---|---|
ID: | Q8T6B1_PLAFA |
AC: | Q8T6B1 |
Organism: | Plasmodium falciparum |
Reign: | Eukaryota |
TaxID: | 5833 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
O | 100 % |
B-Factor: | 54.076 |
---|---|
Number of residues: | 15 |
Including | |
Standard Amino Acids: | 13 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | NAD |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.717 | 752.625 |
% Hydrophobic | % Polar |
---|---|
33.63 | 66.37 |
According to VolSite |
HET Code: | AES |
---|---|
Formula: | C8H11FNO2S |
Molecular weight: | 204.242 g/mol |
DrugBank ID: | DB07347 |
Buried Surface Area: | 47.17 % |
Polar Surface area: | 70.16 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 1 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
13.9743 | 17.4002 | 12.3354 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C2 | CB | THR- 183 | 4.33 | 0 | Hydrophobic |
C3 | CB | ALA- 184 | 4.14 | 0 | Hydrophobic |
C5 | CB | ASN- 185 | 4.1 | 0 | Hydrophobic |
F | C2D | NAD- 501 | 4.25 | 0 | Hydrophobic |
C1 | C2D | NAD- 501 | 3.54 | 0 | Hydrophobic |
C5 | C3D | NAD- 501 | 4.05 | 0 | Hydrophobic |
O2S | O2D | NAD- 501 | 2.66 | 149.99 | H-Bond (Protein Donor) |
N8 | O1A | NAD- 501 | 2.61 | 169.09 | H-Bond (Ligand Donor) |
N8 | O1A | NAD- 501 | 2.61 | 0 | Ionic (Ligand Cationic) |