sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4xoi | GTP | Transforming protein RhoA |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4xoi | GTP | Transforming protein RhoA | / | 1.183 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 1.113 | |
| 1cxz | GSP | Transforming protein RhoA | / | 1.088 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 1.087 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.072 | |
| 1kmq | GNP | Transforming protein RhoA | / | 1.053 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.051 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 1.050 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.030 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.030 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.018 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.017 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 1.017 | |
| 4xsg | GSP | Transforming protein RhoA | / | 1.016 | |
| 2c5l | GTP | GTPase HRas | / | 1.013 | |
| 4g0n | GNP | GTPase HRas | / | 1.004 | |
| 3i3s | GNP | GTPase HRas | / | 1.000 | |
| 3k8y | GNP | GTPase HRas | / | 1.000 | |
| 3rs7 | GNP | GTPase HRas | / | 0.998 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.998 | |
| 3lbi | GNP | GTPase HRas | / | 0.993 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 0.992 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.989 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.986 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.986 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.984 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 0.984 | |
| 3rsl | GNP | GTPase HRas | / | 0.983 | |
| 3ddc | GNP | GTPase HRas | / | 0.982 | |
| 2rge | GNP | GTPase HRas | / | 0.981 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.980 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.979 | |
| 3rs4 | GNP | GTPase HRas | / | 0.979 | |
| 4dlw | GNP | GTPase HRas | / | 0.979 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.974 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 0.973 | |
| 4dvg | GSP | Rho family GTPase | / | 0.973 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 0.971 | |
| 2rgg | GNP | GTPase HRas | / | 0.971 | |
| 3tgp | GNP | GTPase HRas | / | 0.971 | |
| 3lbh | GNP | GTPase HRas | / | 0.967 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.965 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.964 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 0.962 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 0.959 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.958 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 0.956 | |
| 3rs0 | GNP | GTPase HRas | / | 0.955 | |
| 5b2z | GNP | GTPase HRas | / | 0.953 | |
| 3v4f | GNP | GTPase HRas | / | 0.952 | |
| 4dsn | GCP | GTPase KRas | / | 0.950 | |
| 4nyj | GNP | GTPase HRas | / | 0.949 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.947 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.941 | |
| 3k9l | GNP | GTPase HRas | / | 0.939 | |
| 3lbn | GNP | GTPase HRas | / | 0.938 | |
| 3oiu | GNP | GTPase HRas | / | 0.937 | |
| 4xvq | GNP | GTPase HRas | / | 0.937 | |
| 3rs5 | GNP | GTPase HRas | / | 0.935 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.935 | |
| 4xvr | GNP | GTPase HRas | / | 0.935 | |
| 3oiv | GNP | GTPase HRas | / | 0.934 | |
| 3oiw | GNP | GTPase HRas | / | 0.932 | |
| 4dlv | GNP | GTPase HRas | / | 0.932 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.931 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 0.930 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.928 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 0.924 | |
| 4k81 | GTP | GTPase HRas | / | 0.924 | |
| 4l9w | GNP | GTPase HRas | / | 0.924 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.921 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.919 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.919 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.918 | |
| 4dlt | GNP | GTPase HRas | / | 0.918 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.917 | |
| 4dls | GNP | GTPase HRas | / | 0.916 | |
| 2rgc | GNP | GTPase HRas | / | 0.915 | |
| 1lfd | GNP | GTPase HRas | / | 0.914 | |
| 2rgb | GNP | GTPase HRas | / | 0.910 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.908 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.908 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.907 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 0.907 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.906 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.906 | |
| 4dso | GSP | GTPase KRas | / | 0.906 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.904 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.901 | |
| 4dlx | GNP | GTPase HRas | / | 0.900 | |
| 4dlz | GNP | GTPase HRas | / | 0.900 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.899 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.897 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.895 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.893 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.892 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.891 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 0.889 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.889 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.889 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.887 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.885 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.885 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.884 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.884 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.884 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.883 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.882 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.880 | |
| 4mit | GTP | Rho-related protein racC | / | 0.880 | |
| 4q03 | GDP | GTPase KRas | / | 0.880 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.879 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.878 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.877 | |
| 3ref | GDP | Rho family GTPase | / | 0.876 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.875 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.875 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.871 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.869 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.869 | |
| 4nyi | GNP | GTPase HRas | / | 0.869 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.867 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.867 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.865 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.865 | |
| 4dsu | GDP | GTPase KRas | / | 0.864 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.864 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.863 | |
| 4wa7 | GDP | GTPase KRas | / | 0.863 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.861 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.860 | |
| 4ldj | GDP | GTPase KRas | / | 0.860 | |
| 4q02 | GDP | GTPase KRas | / | 0.860 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.858 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.856 | |
| 4ql3 | GDP | GTPase KRas | / | 0.856 | |
| 2cl6 | CAG | GTPase HRas | / | 0.855 | |
| 4epx | GDP | GTPase KRas | / | 0.854 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.852 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.851 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 0.850 | |
| 4epw | GDP | GTPase KRas | / | 0.850 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.850 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.850 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.850 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.849 | |
| 3l8y | GNP | GTPase HRas | / | 0.848 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.848 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.847 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.846 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.846 | |
| 4lpk | GDP | GTPase KRas | / | 0.845 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.845 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.844 | |
| 4lv6 | GDP | GTPase KRas | / | 0.844 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.843 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.842 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.842 | |
| 2ce2 | GDP | GTPase HRas | / | 0.841 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.841 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.841 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 0.841 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.835 | |
| 4tq9 | GDP | GTPase KRas | / | 0.835 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.826 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.826 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.826 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.825 | |
| 3kud | GDP | GTPase HRas | / | 0.825 | |
| 4obe | GDP | GTPase KRas | / | 0.825 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.824 | |
| 4db1 | ANP | Myosin-7 | / | 0.824 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.823 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.823 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.823 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.822 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.821 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.819 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.817 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.816 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.816 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.815 | |
| 4l9s | GDP | GTPase HRas | / | 0.815 | |
| 2fna | ADP | Uncharacterized protein | / | 0.811 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.810 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.809 | |
| 4l8g | GDP | GTPase KRas | / | 0.809 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.805 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.804 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.804 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.803 | |
| 3r9x | GNP | GTPase Era | / | 0.799 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.797 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.797 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.796 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.796 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.796 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.794 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.794 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.794 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.793 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.793 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.793 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.793 | |
| 3ftq | GNP | Septin-2 | / | 0.793 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.792 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.792 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.792 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.792 | |
| 4xvu | ATP | ATPase GET3 | / | 0.792 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.790 | |
| 4v02 | ATP | Site-determining protein | / | 0.790 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.789 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.787 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.786 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.784 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.784 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.783 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.782 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.782 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.779 | |
| 2xtn | GTP | GTPase IMAP family member 2 | / | 0.779 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.778 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.778 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.778 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.777 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.776 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.776 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.776 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.776 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.776 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.775 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.774 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.774 | |
| 1ake | AP5 | Adenylate kinase | / | 0.773 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.772 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.772 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.772 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.772 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.771 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.771 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.769 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.769 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.769 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.768 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.768 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.767 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.767 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.766 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.766 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.765 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.765 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.765 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.765 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.765 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.764 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.764 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.764 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.764 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.763 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.763 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.762 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.761 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.761 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.760 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.760 | |
| 5ftc | ADP | TPR domain protein | / | 0.760 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.759 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.759 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.758 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.758 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.758 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.758 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.758 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.758 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.758 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.758 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.757 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.755 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.754 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.753 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.752 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.751 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.751 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.750 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.749 | |
| 4mkh | AP5 | Adenylate kinase | / | 0.749 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.748 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.748 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.748 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.747 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.747 | |
| 1xmv | ADP | Protein RecA | / | 0.745 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.745 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.744 | |
| 4zca | ADP | Kinesin-like protein KIF11 | / | 0.744 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.742 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.742 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.741 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.741 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.740 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.740 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.740 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.740 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.740 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.738 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.738 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.738 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.737 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.737 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.735 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.731 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.730 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.730 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.730 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.729 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.728 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.726 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.725 | |
| 2whx | ADP | Genome polyprotein | 3.4.21.91 | 0.725 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.725 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.724 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.723 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.722 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.722 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.722 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.720 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.720 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.720 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.719 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.719 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.719 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.718 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.718 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.718 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.717 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.716 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.715 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.714 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.714 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.712 | |
| 2r6g | ATP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.712 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.712 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.711 | |
| 2pc9 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.711 | |
| 2ad5 | ADP | CTP synthase | / | 0.709 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.708 | |
| 3ieu | GDP | GTPase Era | / | 0.708 | |
| 3qbv | GDP | Cell division control protein 42 homolog | / | 0.707 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.707 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.706 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.705 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.705 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.704 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.704 | |
| 1j7k | ATP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.702 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.701 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.699 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.697 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.697 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.697 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.696 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.696 | |
| 4qnr | ATP | Psp operon transcriptional activator | / | 0.696 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.695 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.693 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.693 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.693 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.691 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.690 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.690 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.689 | |
| 1e4y | AP5 | Adenylate kinase | / | 0.688 | |
| 1l2t | ATP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.687 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.686 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.686 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.686 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.685 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.684 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.683 | |
| 1zio | AP5 | Adenylate kinase | / | 0.683 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.683 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.683 | |
| 4i1v | ADP | Dephospho-CoA kinase | / | 0.683 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.682 | |
| 4o4l | GTP | Tubulin alpha-1B chain | / | 0.681 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.680 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.680 | |
| 4nu0 | AP5 | Adenylate kinase | / | 0.680 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.679 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.678 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.678 | |
| 2zro | ADP | Protein RecA | / | 0.677 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.677 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.677 | |
| 4pl0 | ANP | Microcin-J25 export ATP-binding/permease protein McjD | / | 0.677 | |
| 4ymu | ATP | ABC-type polar amino acid transport system, ATPase component | / | 0.675 | |
| 5cyp | GSP | Septin-9 | / | 0.675 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.674 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.673 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.673 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.672 | |
| 3l1c | ADP | Protein claret segregational | / | 0.672 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.672 | |
| 4e2w | JHZ | Methyltransferase | / | 0.671 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.671 | |
| 4wpu | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.670 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.668 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.667 | |
| 2aky | AP5 | Adenylate kinase | / | 0.667 | |
| 3nbx | ADP | ATPase RavA | 3.6.3 | 0.667 | |
| 3uk6 | ADP | RuvB-like 2 | 3.6.4.12 | 0.667 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.666 | |
| 1w7i | ADP | Unconventional myosin-Va | / | 0.664 | |
| 1zm7 | TTP | Deoxynucleoside kinase | / | 0.664 | |
| 2cea | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.664 | |
| 3sup | DCP | DNA-directed DNA polymerase | / | 0.664 | |
| 4mkg | AP5 | Adenylate kinase | / | 0.664 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.661 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.660 | |
| 3zcb | ATP | Adenosine monophosphate-protein transferase VbhT | 2.7.7.n1 | 0.660 | |
| 4w5j | AP5 | Adenylate kinase | / | 0.660 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.659 | |
| 4ohw | ATP | Protein clpf-1 | / | 0.659 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.658 | |
| 2npi | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.658 | |
| 1w5a | GTP | Cell division protein FtsZ 1 | / | 0.656 | |
| 3b05 | IPE | Isopentenyl-diphosphate delta-isomerase | / | 0.656 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.656 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.655 | |
| 1xbt | TTP | Thymidine kinase, cytosolic | 2.7.1.21 | 0.655 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.654 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.654 | |
| 2rgx | AP5 | Adenylate kinase | / | 0.654 | |
| 4e2x | TYD | Methyltransferase | / | 0.654 | |
| 4mkf | AP5 | Adenylate kinase | / | 0.654 | |
| 3sop | GDP | Neuronal-specific septin-3 | / | 0.653 | |
| 4to4 | DGT | Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 | 3.1.5 | 0.653 | |
| 3dkv | AP5 | Adenylate kinase | / | 0.651 | |
| 3dzd | ADP | Transcriptional regulator (NtrC family) | / | 0.651 | |
| 3mhy | ATP | Nitrogen regulatory protein P-II 1 | / | 0.651 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.651 | |
| 4cok | TPP | Pyruvate decarboxylase | / | 0.651 | |
| 1e32 | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.650 | |
| 3hiy | UTP | Uncharacterized protein | / | 0.650 |