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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4tm4 FDA KtzI

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
4tm4 FDAKtzI / 1.287
4tm1 FDAKtzI / 1.260
4tlx FDAKtzI / 1.258
4tm0 FADKtzI / 0.981
4tlz FADKtzI / 0.969
4tm3 FADKtzI / 0.928
4b63 FADL-ornithine N(5)-monooxygenase / 0.916
4b65 FADL-ornithine N(5)-monooxygenase / 0.840
4jq9 FADDihydrolipoyl dehydrogenase / 0.828
2q7v FADThioredoxin reductase / 0.818
4b69 FADL-ornithine N(5)-monooxygenase / 0.818
4b64 FADL-ornithine N(5)-monooxygenase / 0.812
4hb9 FADUncharacterized protein / 0.800
4b68 FADL-ornithine N(5)-monooxygenase / 0.795
4b66 FADL-ornithine N(5)-monooxygenase / 0.789
1e6e FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.775
3nlc FADUncharacterized protein / 0.775
4x4j FADPutative oxygenase / 0.764
3kkj FADRenalase / 0.763
5cku FADL-ornithine N(5)-monooxygenase / 0.761
5i39 FADL-amino acid deaminase / 0.761
4b67 FADL-ornithine N(5)-monooxygenase / 0.757
4jdr FADDihydrolipoyl dehydrogenase 1.8.1.4 0.755
4nzh FADL-ornithine N(5)-monooxygenase / 0.754
5hhf FDAUDP-galactopyranose mutase / 0.754
3s5w FADL-ornithine N(5)-monooxygenase / 0.751
3rnm FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.749
2vq7 FADPutative flavin-containing monooxygenase / 0.745
4mih FADPyranose 2-oxidase 1.1.3.10 0.742
1zx9 FADMercuric reductase 1.16.1.1 0.740
2fje FADAdenylylsulfate reductase, subunit A (AprA) / 0.740
3pl8 FADPyranose 2-oxidase / 0.738
4mok FADPyranose 2-oxidase / 0.733
3r9u FADThioredoxin reductase / 0.732
2gv8 FADThiol-specific monooxygenase 1.14.13 0.731
4lii FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.730
5fs8 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.730
4a99 FADTetX family tetracycline inactivation enzyme / 0.728
2yg7 FADPutrescine oxidase / 0.727
3qvp FADGlucose oxidase 1.1.3.4 0.727
3lsm SFDPyranose 2-oxidase / 0.726
1d4c FADFumarate reductase flavoprotein subunit 1.3.5.4 0.725
3ics FADCoenzyme A disulfide reductase / 0.723
1gra FADGlutathione reductase, mitochondrial 1.8.1.7 0.722
3ish FADThioredoxin reductase 1.8.1.9 0.722
1k4q FADGlutathione reductase, mitochondrial 1.8.1.7 0.721
3k30 ADPHistamine dehydrogenase / 0.720
1mxt FAECholesterol oxidase 1.1.3.6 0.717
1n1p FADCholesterol oxidase 1.1.3.6 0.717
1n4v FADCholesterol oxidase 1.1.3.6 0.717
3grs FADGlutathione reductase, mitochondrial 1.8.1.7 0.717
3ict FADCoenzyme A disulfide reductase / 0.717
4xwr FADCholesterol oxidase 1.1.3.6 0.717
4xxg FADCholesterol oxidase 1.1.3.6 0.717
4cnk FADL-amino acid oxidase / 0.716
1dnc FADGlutathione reductase, mitochondrial 1.8.1.7 0.715
1nhs FADNADH peroxidase 1.11.1.1 0.715
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.715
4ntd FADThioredoxin reductase / 0.715
5eow FAD6-hydroxynicotinate 3-monooxygenase 1.14.13.114 0.715
1cjc FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.714
2yg6 FADPutrescine oxidase / 0.714
4k2x FADPolyketide oxygenase/hydroxylase / 0.714
1ijh FADCholesterol oxidase 1.1.3.6 0.713
1n4u FAECholesterol oxidase 1.1.3.6 0.712
2gew FADCholesterol oxidase 1.1.3.6 0.712
3cnj FADCholesterol oxidase 1.1.3.6 0.712
3gyi FADCholesterol oxidase 1.1.3.6 0.712
3gyj FADCholesterol oxidase 1.1.3.6 0.712
4u2s FDACholesterol oxidase 1.1.3.6 0.712
5buk FADFADH2-dependent halogenase / 0.712
1nhr FADNADH peroxidase 1.11.1.1 0.711
3cge FADCoenzyme A disulfide reductase / 0.711
3m12 FADMonomeric sarcosine oxidase 1.5.3.1 0.711
1d4d FADFumarate reductase flavoprotein subunit 1.3.5.4 0.709
2bac FADPutative aminooxidase / 0.709
3g5q FADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO / 0.709
4em3 FADCoenzyme A disulfide reductase / 0.709
4ysh FADGlycine oxidase / 0.709
2xvf FADPutative flavin-containing monooxygenase / 0.708
3k4c FADPyranose 2-oxidase / 0.708
1wam FADUDP-galactopyranose mutase 5.4.99.9 0.707
3cox FADCholesterol oxidase 1.1.3.6 0.707
4mo2 FADUDP-galactopyranose mutase / 0.707
4gr1 FADGlutathione reductase, mitochondrial 1.8.1.7 0.706
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.706
1nhq FADNADH peroxidase 1.11.1.1 0.705
3k7m FAD6-hydroxy-L-nicotine oxidase / 0.705
4m52 FADDihydrolipoyl dehydrogenase 1.8.1.4 0.705
3b6d FAECholesterol oxidase 1.1.3.6 0.703
3ihg FADAklavinone 12-hydroxylase RdmE / 0.703
3lsi FADPyranose 2-oxidase / 0.703
4icy FADPgaE / 0.703
2igo FADPyranose 2-oxidase / 0.702
2npx FADNADH peroxidase 1.11.1.1 0.702
2o06 MTASpermidine synthase 2.5.1.16 0.702
1n4w FADCholesterol oxidase 1.1.3.6 0.701
2gvc FADThiol-specific monooxygenase 1.14.13 0.701
1b8s FADCholesterol oxidase 1.1.3.6 0.700
1i8t FADUDP-galactopyranose mutase 5.4.99.9 0.700
1jnr FADAdenylylsulfate reductase, subunit A (AprA) / 0.700
4bk2 FADProbable salicylate monooxygenase / 0.700
4cnj FADL-amino acid oxidase / 0.700
4udq FAD5-(hydroxymethyl)furfural oxidase / 0.700
1gpe FADGlucose oxidase 1.1.3.4 0.699
4eqr FADCoenzyme A disulfide reductase / 0.699
4nte FADDepH / 0.699
1e1k FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.698
1e1l FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.698
2xvi FADPutative flavin-containing monooxygenase / 0.698
4qi4 FADCellobiose dehydrogenase / 0.698
1cc2 FADCholesterol oxidase 1.1.3.6 0.697
3icr FADCoenzyme A disulfide reductase / 0.697
1f8w FADNADH peroxidase 1.11.1.1 0.696
1gte FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.695
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.695
4bk3 FADProbable salicylate monooxygenase / 0.695
4rek FADCholesterol oxidase 1.1.3.6 0.695
2xlp FADPutative flavin-containing monooxygenase / 0.694
3mj4 FADUDP-galactopyranose mutase / 0.693
2gh5 FADGlutathione reductase, mitochondrial 1.8.1.7 0.692
1ger FADGlutathione reductase 1.8.1.7 0.691
3uox FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.691
4fwj FADLysine-specific histone demethylase 1B 1 0.691
3cn8 FADPolyamine oxidase FMS1 / 0.690
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.690
3cty FADProbable thioredoxin reductase / 0.689
4ap1 FADSteroid monooxygenase / 0.688
4bjz FADProbable salicylate monooxygenase / 0.687
1ebd FADDihydrolipoyl dehydrogenase 1.8.1.4 0.686
1ojt FADDihydrolipoyl dehydrogenase / 0.686
3a27 SAMtRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase / 0.686
4eqs FADCoenzyme A disulfide reductase / 0.686
4k5r FADOxygenase / 0.686
2dki FAD3-hydroxybenzoate 4-monooxygenase 1.14.13.23 0.685
3ad9 NADSubunit alpha of sarocosine oxidase / 0.685
4ynt FDAGlucose oxidase, putative / 0.685
1feb FADTrypanothione reductase 1.8.1.12 0.684
1grb FADGlutathione reductase, mitochondrial 1.8.1.7 0.684
3nix FADFlavoprotein/dehydrogenase / 0.684
3p9u FADTetX family tetracycline inactivation enzyme / 0.684
1npx FADNADH peroxidase 1.11.1.1 0.683
2b9x FADPutative aminooxidase / 0.683
2rgh FADAlpha-Glycerophosphate Oxidase / 0.683
3ada NADSubunit alpha of sarocosine oxidase / 0.683
4guv FADTetX family tetracycline inactivation enzyme / 0.683
4qi7 FADCellobiose dehydrogenase / 0.683
5eb5 FAD(R)-mandelonitrile lyase 1 4.1.2.10 0.683
1cbo FADCholesterol oxidase 1.1.3.6 0.682
3a26 MTAtRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase / 0.682
3gsi FADDimethylglycine oxidase 1.5.3.10 0.682
5fa5 MTAProtein arginine N-methyltransferase 5 / 0.682
1zmd FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.681
2np6 NEAModification methylase TaqI 2.1.1.72 0.681
2qa1 FADPgaE / 0.681
3dme FADPutative conserved exported protein / 0.681
3lzx FADFerredoxin--NADP reductase 2 1.18.1.2 0.681
4u8o FDAUDP-galactopyranose mutase / 0.681
1nhp FADNADH peroxidase 1.11.1.1 0.680
2a8x FADDihydrolipoyl dehydrogenase 1.8.1.4 0.680
2vqb FADPutative flavin-containing monooxygenase / 0.680
2e1m FADL-glutamate oxidase / 0.679
3k4n FADPyranose 2-oxidase / 0.679
3t37 FADPyridoxine 4-oxidase / 0.679
3uov FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.679
4mo2 FDAUDP-galactopyranose mutase / 0.679
4pyo SAHCatechol O-methyltransferase 2.1.1.6 0.679
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.678
1pdh FASp-hydroxybenzoate hydroxylase / 0.678
2uyh SAHModification methylase HhaI 2.1.1.37 0.678
3ept FDAPutative FAD-monooxygenase / 0.678
3he3 FADUDP-galactopyranose mutase / 0.678
3mht SAHModification methylase HhaI 2.1.1.37 0.678
3rha FDAPutrescine oxidase / 0.678
3t14 FADSulfide-quinone reductase / 0.678
1ges FADGlutathione reductase 1.8.1.7 0.677
2c7g FADNADPH-ferredoxin reductase FprA 1.18.1.2 0.677
2hmv ADPKtr system potassium uptake protein A / 0.677
4u8l FDAUDP-galactopyranose mutase / 0.677
4yac NAIC alpha-dehydrogenase / 0.677
2jk6 FADTrypanothione reductase / 0.676
2q0k FADThioredoxin reductase 1.8.1.9 0.676
2x3n FADProbable FAD-dependent monooxygenase / 0.676
2xlr FADPutative flavin-containing monooxygenase / 0.676
3axb FADPutative oxidoreductase / 0.675
3bwc SAMSpermidine synthase, putative / 0.675
5er0 FADUncharacterized NAD(FAD)-dependent dehydrogenase / 0.675
1lqu FADNADPH-ferredoxin reductase FprA 1.18.1.2 0.674
2hqm FADGlutathione reductase 1.8.1.7 0.674
4usr FADMonooxygenase / 0.674
3oz2 FADDigeranylgeranylglycerophospholipid reductase / 0.673
4aos FADSteroid monooxygenase / 0.673
4em4 FADCoenzyme A disulfide reductase / 0.673
5fs9 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.673
3kpk FADSulfide-quinone reductase / 0.672
3rw9 DSHSpermidine synthase 2.5.1.16 0.672
3sz0 FADSulfide-quinone reductase / 0.672
3u81 SAHCatechol O-methyltransferase 2.1.1.6 0.672
3utg FDAUDP-galactopyranose mutase / 0.672
3we0 FADLysine 2-monooxygenase / 0.672
4iv8 SAMPhosphoethanolamine N-methyltransferase,putative / 0.672
4qi5 FADCellobiose dehydrogenase / 0.672
5fs7 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.672
1get FADGlutathione reductase 1.8.1.7 0.671
2cdu ADPNADH oxidase / 0.671
2nvk FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.671
2zth SAMCatechol O-methyltransferase 2.1.1.6 0.671
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.671
4ap3 FADSteroid monooxygenase / 0.671
4u2t FADCholesterol oxidase 1.1.3.6 0.671
1rsg FADPolyamine oxidase FMS1 / 0.670
2jb1 FADL-amino acid oxidase / 0.670
2yxl SFG450aa long hypothetical fmu protein / 0.670
4j33 FADKynurenine 3-monooxygenase / 0.670
4nev FADTrypanothione reductase / 0.670
1cf3 FADGlucose oxidase 1.1.3.4 0.669
1grh FADGlutathione reductase, mitochondrial 1.8.1.7 0.669
2jb2 FADL-amino acid oxidase / 0.669
2xve FADPutative flavin-containing monooxygenase / 0.669
4u8k FDAUDP-galactopyranose mutase / 0.669
2ih2 NEAModification methylase TaqI 2.1.1.72 0.668
2ibt NEAModification methylase TaqI 2.1.1.72 0.667
1e1n FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.666
3ic9 FADPutative dihydrolipoamide dehydrogenase / 0.666
1b4v FADCholesterol oxidase 1.1.3.6 0.665
2q0l FADThioredoxin reductase 1.8.1.9 0.665
2xdo FADTetX family tetracycline inactivation enzyme / 0.665
4dna FADProbable glutathione reductase / 0.665
1e1m FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.664
2eq7 FADDihydrolipoyl dehydrogenase / 0.664
5jdz SAHMethyl transferase / 0.664
7mht SAHModification methylase HhaI 2.1.1.37 0.664
1lpf FADDihydrolipoyl dehydrogenase 1.8.1.4 0.663
3gwf FADCyclohexanone monooxygenase / 0.663
3l8k ADPDihydrolipoamide dehydrogenase (PdhD-3) / 0.663
4c04 SFGProtein arginine N-methyltransferase 6 / 0.663
4wx1 FDAUDP-galactopyranose mutase / 0.663
9mht SAHModification methylase HhaI 2.1.1.37 0.663
1grg FADGlutathione reductase, mitochondrial 1.8.1.7 0.661
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.661
4u8m FDAUDP-galactopyranose mutase / 0.661
1d7y FADFerredoxin reductase / 0.660
1lvl FADDihydrolipoyl dehydrogenase 1.8.1.4 0.660
1wg8 SAMRibosomal RNA small subunit methyltransferase H / 0.660
3bg7 FADPyranose 2-oxidase / 0.660
1joa FADNADH peroxidase 1.11.1.1 0.659
2bi8 FADUDP-galactopyranose mutase 5.4.99.9 0.659
2bra FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.659
1gal FADGlucose oxidase 1.1.3.4 0.658
4gde FDAUDP-galactopyranose mutase / 0.658
1skm SAHModification methylase HhaI 2.1.1.37 0.657
1vdc FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.657
2c7q SAHModification methylase HhaI 2.1.1.37 0.657
2yg4 FADPutrescine oxidase / 0.657
3djg FADGlutathione reductase, mitochondrial 1.8.1.7 0.657
1h83 FADPolyamine oxidase 1.5.3.14 0.656
3a25 SAMtRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase / 0.656
3lzw FADFerredoxin--NADP reductase 2 1.18.1.2 0.656
4aox FADSteroid monooxygenase / 0.656
2aot SAHHistamine N-methyltransferase 2.1.1.8 0.655
2ih5 NEAModification methylase TaqI 2.1.1.72 0.655
3a4t SFGtRNA (cytosine(48)-C(5))-methyltransferase 2.1.1 0.655
3qow SAMHistone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.655
4u2l SFDCholesterol oxidase 1.1.3.6 0.655
2plw SAMRibosomal RNA methyltransferase, putative / 0.654
3ics ADPCoenzyme A disulfide reductase / 0.654
4cy8 FDA2-hydroxybiphenyl-3-monooxygenase / 0.654
1zq9 SAMProbable dimethyladenosine transferase / 0.653
2p35 SAHTrans-aconitate 2-methyltransferase / 0.653
2w0h FADTrypanothione reductase / 0.653
3g8a SAHRibosomal RNA small subunit methyltransferase G / 0.653
4fp9 SAM5-methylcytosine rRNA methyltransferase NSUN4 2.1.1 0.653
5hsa FASAlcohol oxidase 1 1.1.3.13 0.653
1v59 FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.652
3dk9 FADGlutathione reductase, mitochondrial 1.8.1.7 0.652
3ka7 FADPutative oxidoreductase / 0.652
3uoz FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.652
1q1r FADPutidaredoxin reductase 1.18.1.5 0.651
1zmc FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.651
2rab FADGlutathione amide reductase / 0.651
3cgb FADCoenzyme A disulfide reductase / 0.651
1tdk FADL-amino-acid oxidase 1.4.3.2 0.650
2f5z FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.650