2.700 Å
X-ray
2009-09-30
Name: | Histamine dehydrogenase |
---|---|
ID: | Q6IWJ5_NOCSI |
AC: | Q6IWJ5 |
Organism: | Nocardioides simplex |
Reign: | Bacteria |
TaxID: | 2045 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 14.949 |
---|---|
Number of residues: | 37 |
Including | |
Standard Amino Acids: | 37 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.047 | 624.375 |
% Hydrophobic | % Polar |
---|---|
35.14 | 64.86 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 70.04 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
19.4976 | -7.92459 | 50.9402 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3B | N | SER- 402 | 2.85 | 153.88 | H-Bond (Protein Donor) |
O3' | OE1 | GLU- 421 | 2.93 | 174.24 | H-Bond (Ligand Donor) |
O3' | OE2 | GLU- 421 | 3.26 | 123.94 | H-Bond (Ligand Donor) |
O2' | OE2 | GLU- 421 | 2.78 | 155.35 | H-Bond (Ligand Donor) |
N3 | N | ALA- 422 | 3.17 | 129.41 | H-Bond (Protein Donor) |
O2A | N | ARG- 429 | 2.73 | 167.88 | H-Bond (Protein Donor) |
N6 | O | MET- 467 | 2.94 | 166.27 | H-Bond (Ligand Donor) |
N1 | N | MET- 467 | 3.04 | 143.33 | H-Bond (Protein Donor) |
O1B | N | ASP- 649 | 2.99 | 148.45 | H-Bond (Protein Donor) |