2.200 Å
X-ray
2006-07-11
Name: | Ktr system potassium uptake protein A |
---|---|
ID: | KTRA_BACSU |
AC: | O32080 |
Organism: | Bacillus subtilis |
Reign: | Bacteria |
TaxID: | 224308 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 4 % |
B | 96 % |
B-Factor: | 44.737 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.339 | 253.125 |
% Hydrophobic | % Polar |
---|---|
48.00 | 52.00 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 56.66 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
118.163 | 42.3275 | 35.68 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2B | N | ARG- 16 | 3 | 160.07 | H-Bond (Protein Donor) |
O3' | OD1 | ASP- 36 | 2.8 | 169.79 | H-Bond (Ligand Donor) |
O2' | OD1 | ASP- 36 | 3.31 | 132.86 | H-Bond (Ligand Donor) |
O2' | OD2 | ASP- 36 | 2.66 | 163.26 | H-Bond (Ligand Donor) |
N3 | N | ILE- 37 | 3.31 | 137.75 | H-Bond (Protein Donor) |
C1' | CG1 | ILE- 37 | 4.46 | 0 | Hydrophobic |
N6 | OD1 | ASN- 56 | 3.05 | 139.66 | H-Bond (Ligand Donor) |
N1 | N | ALA- 57 | 2.93 | 162.82 | H-Bond (Protein Donor) |
C1' | CD1 | ILE- 78 | 4.16 | 0 | Hydrophobic |
O1A | NZ | LYS- 103 | 3.86 | 0 | Ionic (Protein Cationic) |
O2A | O | HOH- 605 | 3.03 | 179.96 | H-Bond (Protein Donor) |
O2' | O | HOH- 643 | 2.97 | 159.23 | H-Bond (Protein Donor) |