1.700 Å
X-ray
2015-02-17
Name: | C alpha-dehydrogenase |
---|---|
ID: | C0SUK3_9SPHN |
AC: | C0SUK3 |
Organism: | Sphingobium sp. SYK-6 |
Reign: | Bacteria |
TaxID: | 627192 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 34.518 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 26 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.122 | 270.000 |
% Hydrophobic | % Polar |
---|---|
51.25 | 48.75 |
According to VolSite |
HET Code: | NAI |
---|---|
Formula: | C21H27N7O14P2 |
Molecular weight: | 663.425 g/mol |
DrugBank ID: | DB00157 |
Buried Surface Area: | 55.16 % |
Polar Surface area: | 342.9 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 19 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
-4.94241 | -38.8174 | 10.2204 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2A | OG | SER- 16 | 3 | 166 | H-Bond (Protein Donor) |
C3B | CB | SER- 16 | 4.12 | 0 | Hydrophobic |
O5D | N | VAL- 18 | 2.9 | 148.81 | H-Bond (Protein Donor) |
O3B | OD2 | ASP- 38 | 2.59 | 156.63 | H-Bond (Ligand Donor) |
O2B | OD1 | ASP- 38 | 2.76 | 163.84 | H-Bond (Ligand Donor) |
N3A | N | ILE- 39 | 3.18 | 141.17 | H-Bond (Protein Donor) |
O3B | ND1 | HIS- 43 | 2.94 | 157.63 | H-Bond (Protein Donor) |
N6A | OD1 | ASP- 64 | 3.06 | 142.8 | H-Bond (Ligand Donor) |
N1A | N | LEU- 65 | 3.08 | 172.73 | H-Bond (Protein Donor) |
O5D | O | HOH- 691 | 2.54 | 179.98 | H-Bond (Protein Donor) |