1.700 Å
X-ray
2015-02-17
| Name: | C alpha-dehydrogenase |
|---|---|
| ID: | C0SUK3_9SPHN |
| AC: | C0SUK3 |
| Organism: | Sphingobium sp. SYK-6 |
| Reign: | Bacteria |
| TaxID: | 627192 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 34.518 |
|---|---|
| Number of residues: | 27 |
| Including | |
| Standard Amino Acids: | 26 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.122 | 270.000 |
| % Hydrophobic | % Polar |
|---|---|
| 51.25 | 48.75 |
| According to VolSite | |

| HET Code: | NAI |
|---|---|
| Formula: | C21H27N7O14P2 |
| Molecular weight: | 663.425 g/mol |
| DrugBank ID: | DB00157 |
| Buried Surface Area: | 55.16 % |
| Polar Surface area: | 342.9 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 19 |
| H-Bond Donors: | 6 |
| Rings: | 5 |
| Aromatic rings: | 2 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 11 |
| X | Y | Z |
|---|---|---|
| -4.94241 | -38.8174 | 10.2204 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2A | OG | SER- 16 | 3 | 166 | H-Bond (Protein Donor) |
| C3B | CB | SER- 16 | 4.12 | 0 | Hydrophobic |
| O5D | N | VAL- 18 | 2.9 | 148.81 | H-Bond (Protein Donor) |
| O3B | OD2 | ASP- 38 | 2.59 | 156.63 | H-Bond (Ligand Donor) |
| O2B | OD1 | ASP- 38 | 2.76 | 163.84 | H-Bond (Ligand Donor) |
| N3A | N | ILE- 39 | 3.18 | 141.17 | H-Bond (Protein Donor) |
| O3B | ND1 | HIS- 43 | 2.94 | 157.63 | H-Bond (Protein Donor) |
| N6A | OD1 | ASP- 64 | 3.06 | 142.8 | H-Bond (Ligand Donor) |
| N1A | N | LEU- 65 | 3.08 | 172.73 | H-Bond (Protein Donor) |
| O5D | O | HOH- 691 | 2.54 | 179.98 | H-Bond (Protein Donor) |