2.500 Å
X-ray
2009-04-28
| Name: | tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase |
|---|---|
| ID: | TYW2_PYRHO |
| AC: | O58523 |
| Organism: | Pyrococcus horikoshii |
| Reign: | Archaea |
| TaxID: | 70601 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 59.237 |
|---|---|
| Number of residues: | 23 |
| Including | |
| Standard Amino Acids: | 23 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.967 | 762.750 |
| % Hydrophobic | % Polar |
|---|---|
| 50.00 | 50.00 |
| According to VolSite | |

| HET Code: | MTA |
|---|---|
| Formula: | C11H15N5O3S |
| Molecular weight: | 297.333 g/mol |
| DrugBank ID: | DB02282 |
| Buried Surface Area: | 62.85 % |
| Polar Surface area: | 144.61 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 8 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| -0.2364 | -31.4975 | -37.2312 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C1' | CD1 | PHE- 133 | 4.31 | 0 | Hydrophobic |
| C4' | CB | PHE- 133 | 4 | 0 | Hydrophobic |
| O2' | OE2 | GLU- 155 | 2.65 | 170.07 | H-Bond (Ligand Donor) |
| O3' | OE1 | GLU- 155 | 2.7 | 164.06 | H-Bond (Ligand Donor) |
| N3 | N | LYS- 156 | 3.19 | 135.86 | H-Bond (Protein Donor) |
| N6 | OD1 | ASP- 183 | 3.02 | 161.31 | H-Bond (Ligand Donor) |
| N1 | N | ASN- 184 | 2.78 | 159.66 | H-Bond (Protein Donor) |
| C5' | CD1 | TYR- 200 | 3.96 | 0 | Hydrophobic |