sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4l9w | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4l9w | GNP | GTPase HRas | / | 1.241 | |
| 3l8y | GNP | GTPase HRas | / | 1.234 | |
| 3rs0 | GNP | GTPase HRas | / | 1.234 | |
| 3rsl | GNP | GTPase HRas | / | 1.234 | |
| 3oiw | GNP | GTPase HRas | / | 1.219 | |
| 3rs7 | GNP | GTPase HRas | / | 1.217 | |
| 3rs4 | GNP | GTPase HRas | / | 1.216 | |
| 3rs5 | GNP | GTPase HRas | / | 1.216 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.215 | |
| 4dlx | GNP | GTPase HRas | / | 1.214 | |
| 4dlz | GNP | GTPase HRas | / | 1.214 | |
| 3lbn | GNP | GTPase HRas | / | 1.204 | |
| 3k8y | GNP | GTPase HRas | / | 1.199 | |
| 3oiv | GNP | GTPase HRas | / | 1.199 | |
| 4dlt | GNP | GTPase HRas | / | 1.199 | |
| 3i3s | GNP | GTPase HRas | / | 1.198 | |
| 4dlv | GNP | GTPase HRas | / | 1.198 | |
| 2rgc | GNP | GTPase HRas | / | 1.196 | |
| 3lbi | GNP | GTPase HRas | / | 1.196 | |
| 3v4f | GNP | GTPase HRas | / | 1.182 | |
| 2c5l | GTP | GTPase HRas | / | 1.180 | |
| 5b2z | GNP | GTPase HRas | / | 1.180 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.176 | |
| 2rge | GNP | GTPase HRas | / | 1.167 | |
| 3oiu | GNP | GTPase HRas | / | 1.165 | |
| 3lbh | GNP | GTPase HRas | / | 1.164 | |
| 4dls | GNP | GTPase HRas | / | 1.163 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.161 | |
| 4dlw | GNP | GTPase HRas | / | 1.152 | |
| 3ddc | GNP | GTPase HRas | / | 1.150 | |
| 4dsn | GCP | GTPase KRas | / | 1.149 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.148 | |
| 4g0n | GNP | GTPase HRas | / | 1.148 | |
| 2rgb | GNP | GTPase HRas | / | 1.147 | |
| 4k81 | GTP | GTPase HRas | / | 1.121 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.120 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.118 | |
| 4nyj | GNP | GTPase HRas | / | 1.115 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.112 | |
| 4nyi | GNP | GTPase HRas | / | 1.109 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.108 | |
| 3k9l | GNP | GTPase HRas | / | 1.096 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.093 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.084 | |
| 2rgg | GNP | GTPase HRas | / | 1.080 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.078 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.073 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.060 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.059 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.054 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.054 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 1.052 | |
| 3tgp | GNP | GTPase HRas | / | 1.044 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.040 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 1.036 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.030 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.024 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.023 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.023 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.018 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.018 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 1.015 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 1.014 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.008 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.008 | |
| 4xvq | GNP | GTPase HRas | / | 1.008 | |
| 1kmq | GNP | Transforming protein RhoA | / | 1.004 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 1.003 | |
| 4mit | GTP | Rho-related protein racC | / | 1.003 | |
| 3kud | GDP | GTPase HRas | / | 1.000 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.999 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.999 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.995 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.993 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.993 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.991 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.989 | |
| 4xvr | GNP | GTPase HRas | / | 0.989 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.988 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.986 | |
| 4dso | GSP | GTPase KRas | / | 0.984 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.982 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.981 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.980 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.976 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.972 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.971 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.970 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.969 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.967 | |
| 2ce2 | GDP | GTPase HRas | / | 0.966 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.964 | |
| 4ql3 | GDP | GTPase KRas | / | 0.964 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.962 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.958 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.958 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.957 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.956 | |
| 4l9s | GDP | GTPase HRas | / | 0.954 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.951 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.951 | |
| 4wa7 | GDP | GTPase KRas | / | 0.950 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.948 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.942 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.939 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.939 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.936 | |
| 4l8g | GDP | GTPase KRas | / | 0.935 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.934 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.932 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.932 | |
| 4q03 | GDP | GTPase KRas | / | 0.931 | |
| 4epw | GDP | GTPase KRas | / | 0.929 | |
| 4tq9 | GDP | GTPase KRas | / | 0.929 | |
| 4q02 | GDP | GTPase KRas | / | 0.928 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.927 | |
| 4epx | GDP | GTPase KRas | / | 0.925 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.924 | |
| 2cl6 | CAG | GTPase HRas | / | 0.923 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.918 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.918 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.917 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.916 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.916 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.916 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.913 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.911 | |
| 1lfd | GNP | GTPase HRas | / | 0.908 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.908 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.906 | |
| 4dvg | GSP | Rho family GTPase | / | 0.906 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.904 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.899 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.897 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.897 | |
| 4ldj | GDP | GTPase KRas | / | 0.894 | |
| 4dsu | GDP | GTPase KRas | / | 0.893 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.892 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.892 | |
| 3r9x | GNP | GTPase Era | / | 0.892 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.887 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.885 | |
| 4lv6 | GDP | GTPase KRas | / | 0.885 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.884 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.883 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.880 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.880 | |
| 4obe | GDP | GTPase KRas | / | 0.880 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.879 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.879 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.878 | |
| 4lpk | GDP | GTPase KRas | / | 0.876 | |
| 4lrw | GDP | GTPase KRas | / | 0.875 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.874 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.873 | |
| 3ftq | GNP | Septin-2 | / | 0.873 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.868 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.868 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.864 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.864 | |
| 4luc | GDP | GTPase KRas | / | 0.864 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.863 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.862 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.861 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.861 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.857 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.857 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.856 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.855 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.854 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.854 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.854 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.853 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.853 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.850 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.848 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.845 | |
| 3ref | GDP | Rho family GTPase | / | 0.845 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.844 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.843 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.838 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.837 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.835 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.835 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.834 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.832 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.831 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.831 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.829 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.826 | |
| 4db1 | ANP | Myosin-7 | / | 0.826 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.825 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.823 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.823 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.822 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.822 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.818 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.818 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.817 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.817 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.817 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.815 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.813 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.813 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.813 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.810 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.805 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.805 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.805 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.804 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.804 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.804 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.804 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.802 | |
| 5bn3 | ADP | NEQ263 | / | 0.802 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.801 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.801 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.799 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.798 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.796 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.796 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.793 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.792 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.792 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.788 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.787 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.786 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.785 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.785 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.783 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.783 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.783 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.779 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.779 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.777 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.777 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.776 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.776 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.772 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.771 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.771 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.771 | |
| 2fna | ADP | Uncharacterized protein | / | 0.771 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.770 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.770 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.770 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.769 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.769 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.769 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.768 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.768 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.768 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.768 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.768 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.766 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.766 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.765 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.765 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.762 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.762 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.761 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.761 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.761 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.760 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.757 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.757 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.757 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.756 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.755 | |
| 1ank | ANP | Adenylate kinase | / | 0.753 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.753 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.753 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.753 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.753 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.753 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.753 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.753 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.752 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.752 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.752 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.752 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.752 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.751 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.750 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.749 | |
| 5cyo | GDP | Septin-9 | / | 0.747 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.743 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.743 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.742 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.741 | |
| 4yqf | GDP | Septin-9 | / | 0.741 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.740 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.740 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.740 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.740 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.739 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.739 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.739 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.738 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.738 | |
| 4v02 | ATP | Site-determining protein | / | 0.738 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.737 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.737 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.736 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.736 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.736 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.736 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.736 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.734 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.734 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.733 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.733 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.732 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.732 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.730 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.728 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.727 | |
| 1xmv | ADP | Protein RecA | / | 0.726 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.726 | |
| 2zts | ADP | Uncharacterized protein | / | 0.725 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.725 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.725 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.725 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.724 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.724 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.722 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.722 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.722 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.721 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.720 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.720 | |
| 4ike | ADP | Adenylate kinase | / | 0.720 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.719 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.718 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.717 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.717 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.717 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.717 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.715 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.715 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.714 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.713 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.713 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.713 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.712 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.712 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.712 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.711 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.711 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.710 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.709 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.708 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.708 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.708 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.708 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.707 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.707 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.707 | |
| 1nly | AGS | Cag alpha | / | 0.706 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.706 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.706 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.706 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.706 | |
| 4jky | ADP | Adenylate kinase | / | 0.706 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.706 | |
| 4c30 | ANP | DNA helicase | / | 0.705 | |
| 1xms | ANP | Protein RecA | / | 0.704 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.704 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.704 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.703 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.703 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.703 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.702 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.702 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.701 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.701 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.699 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.699 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.697 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.697 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.697 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.696 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.695 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.694 | |
| 2eck | ADP | Adenylate kinase | / | 0.694 | |
| 3ea0 | ATP | ATPase, ParA family | / | 0.694 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.694 | |
| 5fm6 | ADP | RuvB-like helicase | / | 0.694 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.693 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.693 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.692 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.690 | |
| 5dac | AGS | Uncharacterized protein | / | 0.690 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.689 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.689 | |
| 4x8l | AP5 | Adenylate kinase | / | 0.688 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.687 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.686 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.686 | |
| 2x19 | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.686 | |
| 4pl0 | ANP | Microcin-J25 export ATP-binding/permease protein McjD | / | 0.686 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.685 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.685 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.684 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.683 | |
| 2vp0 | TTP | Deoxynucleoside kinase | / | 0.683 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.683 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.682 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.682 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.681 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.681 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.680 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.678 | |
| 2zrj | AGS | Protein RecA | / | 0.678 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.678 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.677 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.677 | |
| 4e2x | TYD | Methyltransferase | / | 0.675 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.674 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.673 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.672 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.671 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.669 | |
| 1dvr | ATF | Adenylate kinase | / | 0.668 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.667 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.667 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.667 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.666 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.666 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.665 | |
| 4lfg | IPE | Putative geranyltranstransferase | / | 0.665 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.664 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.663 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.663 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.662 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.662 | |
| 3r7w | GNP | GTP-binding protein GTR2 | / | 0.662 | |
| 4xvu | ATP | ATPase GET3 | / | 0.662 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.659 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.659 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.659 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.659 | |
| 3t7o | UPG | Glycogenin-1 | 2.4.1.186 | 0.659 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.658 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.658 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.657 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.657 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.656 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.656 | |
| 4ceg | ADP | Aurora kinase A | 2.7.11.1 | 0.656 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.655 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.655 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.655 | |
| 4lj9 | ACP | Chaperone protein ClpB | / | 0.655 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.654 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.654 | |
| 2a84 | ATP | Pantothenate synthetase | 6.3.2.1 | 0.653 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.653 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.652 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.652 | |
| 1im2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.651 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.650 |