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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4h2n FAD 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
4h2n FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 1.286
4jy2 FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 1.198
3alm FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 1.155
4h2p FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 1.154
3alj FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 1.093
3gmb FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 1.023
3all FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 0.948
4bjz FADProbable salicylate monooxygenase / 0.946
4bk3 FADProbable salicylate monooxygenase / 0.936
4bk2 FADProbable salicylate monooxygenase / 0.890
4j33 FADKynurenine 3-monooxygenase / 0.864
4j2w FADKynurenine 3-monooxygenase / 0.849
4k2x FADPolyketide oxygenase/hydroxylase / 0.846
4j34 FADKynurenine 3-monooxygenase / 0.845
3rp8 FADFAD-dependent urate hydroxylase / 0.844
4j31 FADKynurenine 3-monooxygenase / 0.829
4k5r FADOxygenase / 0.818
4j36 FADKynurenine 3-monooxygenase / 0.813
2qa1 FADPgaE / 0.810
4cy8 FDA2-hydroxybiphenyl-3-monooxygenase / 0.809
1k0j FADp-hydroxybenzoate hydroxylase / 0.804
2xdo FADTetX family tetracycline inactivation enzyme / 0.800
4a6n FADTetX family tetracycline inactivation enzyme / 0.797
2hqm FADGlutathione reductase 1.8.1.7 0.793
2tpr FADTrypanothione reductase 1.8.1.12 0.793
4opc FDAConserved Archaeal protein / 0.791
4opg FDAConserved Archaeal protein / 0.790
3djj FADGlutathione reductase, mitochondrial 1.8.1.7 0.787
3ept FDAPutative FAD-monooxygenase / 0.786
3atq FDAConserved Archaeal protein / 0.781
1d7l RFLp-hydroxybenzoate hydroxylase / 0.776
2qae FADDihydrolipoyl dehydrogenase 1.8.1.4 0.776
3fmw FADOxygenase / 0.776
2c3c FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.774
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.768
3lad FADDihydrolipoyl dehydrogenase / 0.762
3dk8 FADGlutathione reductase, mitochondrial 1.8.1.7 0.761
1xdi FADNAD(P)H dehydrogenase (quinone) / 0.760
4icy FADPgaE / 0.758
1ges FADGlutathione reductase 1.8.1.7 0.756
2qa2 FADPolyketide oxygenase CabE / 0.751
2wba FADTrypanothione reductase 1.8.1.12 0.748
4nte FADDepH / 0.747
4opd FDAConserved Archaeal protein / 0.747
4opi FDAConserved Archaeal protein / 0.747
4opl FDAConserved Archaeal protein / 0.747
2gh5 FADGlutathione reductase, mitochondrial 1.8.1.7 0.746
1gsn FADGlutathione reductase, mitochondrial 1.8.1.7 0.743
2zzc FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.743
3ab1 FADFerredoxin--NADP reductase 1.18.1.2 0.743
1mo9 FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.741
4j57 FADThioredoxin reductase 2 1.8.1.9 0.741
1fea FADTrypanothione reductase 1.8.1.12 0.740
3atr FDAConserved Archaeal protein / 0.740
2jk6 FADTrypanothione reductase / 0.737
1grb FADGlutathione reductase, mitochondrial 1.8.1.7 0.736
1zx9 FADMercuric reductase 1.16.1.1 0.736
3dgz FADThioredoxin reductase 2, mitochondrial 1.8.1.9 0.735
2wp5 FADTrypanothione reductase / 0.733
1ger FADGlutathione reductase 1.8.1.7 0.732
2eq9 FADDihydrolipoyl dehydrogenase / 0.732
1phh FADp-hydroxybenzoate hydroxylase / 0.731
4opt FDAConserved Archaeal protein / 0.731
3nix FADFlavoprotein/dehydrogenase / 0.729
1feb FADTrypanothione reductase 1.8.1.12 0.728
3dh9 FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.728
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.727
3qfa FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.727
2vou FAD2,6-dihydroxypyridine 3-monooxygenase 1.14.13.10 0.726
4opu FDAConserved Archaeal protein / 0.726
1geu FADGlutathione reductase 1.8.1.7 0.725
1gre FADGlutathione reductase, mitochondrial 1.8.1.7 0.725
2nvk FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.725
2r9z FADGlutathione amide reductase / 0.725
3c4a FADProtodeoxyviolaceinate monooxygenase 1 0.724
4hb9 FADUncharacterized protein / 0.724
1fec FADTrypanothione reductase 1.8.1.12 0.723
3axb FADPutative oxidoreductase / 0.723
1zmc FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.722
3dk9 FADGlutathione reductase, mitochondrial 1.8.1.7 0.721
3oz2 FADDigeranylgeranylglycerophospholipid reductase / 0.721
4up3 FADThioredoxin reductase / 0.721
5eow FAD6-hydroxynicotinate 3-monooxygenase 1.14.13.114 0.720
2x8h FADThioredoxin glutathione reductase / 0.719
4x4j FADPutative oxygenase / 0.719
1ebd FADDihydrolipoyl dehydrogenase 1.8.1.4 0.718
4j56 FADThioredoxin reductase 2 1.8.1.9 0.718
4jn9 FADDepH / 0.717
4m52 FADDihydrolipoyl dehydrogenase 1.8.1.4 0.717
1nhq FADNADH peroxidase 1.11.1.1 0.716
4jq9 FADDihydrolipoyl dehydrogenase / 0.714
1tyt FADTrypanothione reductase 1.8.1.12 0.713
1nhs FADNADH peroxidase 1.11.1.1 0.712
4ntd FADThioredoxin reductase / 0.712
2cfy FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.711
3cnt FADPolyamine oxidase FMS1 / 0.710
1zk7 FADMercuric reductase 1.16.1.1 0.709
2cdu FADNADH oxidase / 0.709
2rab FADGlutathione amide reductase / 0.709
4b1b FADThioredoxin reductase 1.8.1.9 0.709
1bzl FADTrypanothione reductase 1.8.1.12 0.708
1fl2 FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.707
1rsg FADPolyamine oxidase FMS1 / 0.707
2gmh FADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial 1.5.5.1 0.707
3fbs FADOxidoreductase / 0.707
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.706
2eq8 FADDihydrolipoyl dehydrogenase / 0.705
3oc4 FADOxidoreductase, pyridine nucleotide-disulfide family / 0.704
4nev FADTrypanothione reductase / 0.704
1k4q FADGlutathione reductase, mitochondrial 1.8.1.7 0.703
3djg FADGlutathione reductase, mitochondrial 1.8.1.7 0.703
3icr FADCoenzyme A disulfide reductase / 0.703
3lzw FADFerredoxin--NADP reductase 2 1.18.1.2 0.703
4fwe FADLysine-specific histone demethylase 1B 1 0.703
5buk FADFADH2-dependent halogenase / 0.703
5er0 FADUncharacterized NAD(FAD)-dependent dehydrogenase / 0.703
1nhr FADNADH peroxidase 1.11.1.1 0.702
3cty FADProbable thioredoxin reductase / 0.702
3dk4 FADGlutathione reductase, mitochondrial 1.8.1.7 0.702
3ic9 FADPutative dihydrolipoamide dehydrogenase / 0.701
3sqp FADGlutathione reductase, mitochondrial 1.8.1.7 0.701
2eq6 FADDihydrolipoyl dehydrogenase / 0.700
2yqu FADDihydrolipoyl dehydrogenase / 0.700
3lzx FADFerredoxin--NADP reductase 2 1.18.1.2 0.700
3nyc FADFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.700
3ean FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.699
3grs FADGlutathione reductase, mitochondrial 1.8.1.7 0.699
2v6o FADThioredoxin glutathione reductase / 0.698
2x8g FADThioredoxin glutathione reductase / 0.698
2zbw FADFerredoxin--NADP reductase / 0.698
4dsh FDAUncharacterized protein / 0.698
1f8w FADNADH peroxidase 1.11.1.1 0.697
1gte FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.697
1f3p FADFerredoxin reductase / 0.696
2f5z FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.696
3lb8 FADPutidaredoxin reductase 1.18.1.5 0.696
4jdr FADDihydrolipoyl dehydrogenase 1.8.1.4 0.696
3m0o FADMonomeric sarcosine oxidase 1.5.3.1 0.695
3m12 FADMonomeric sarcosine oxidase 1.5.3.1 0.695
4gcm FADThioredoxin reductase 1.8.1.9 0.695
2eq7 FADDihydrolipoyl dehydrogenase / 0.694
4gr1 FADGlutathione reductase, mitochondrial 1.8.1.7 0.694
3p9u FADTetX family tetracycline inactivation enzyme / 0.692
3urh FADDihydrolipoyl dehydrogenase / 0.692
1npx FADNADH peroxidase 1.11.1.1 0.690
3lsm SFDPyranose 2-oxidase / 0.689
4a99 FADTetX family tetracycline inactivation enzyme / 0.688
4guv FADTetX family tetracycline inactivation enzyme / 0.688
1bwc FADGlutathione reductase, mitochondrial 1.8.1.7 0.686
4gdp FADPolyamine oxidase FMS1 / 0.686
1gra FADGlutathione reductase, mitochondrial 1.8.1.7 0.685
1typ FADTrypanothione reductase 1.8.1.12 0.685
3rnm FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.685
4fx9 FADCoenzyme A disulfide reductase 1.8.1.14 0.685
4u8m FDAUDP-galactopyranose mutase / 0.685
2wow FADTrypanothione reductase / 0.683
3k4c FADPyranose 2-oxidase / 0.683
1h7w FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.682
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.681
2zz0 FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.681
2x3n FADProbable FAD-dependent monooxygenase / 0.680
3gsi FADDimethylglycine oxidase 1.5.3.10 0.680
3pl8 FADPyranose 2-oxidase / 0.680
4kpr FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.680
4u8i FDAUDP-galactopyranose mutase / 0.680
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.680
1xpq FADPolyamine oxidase FMS1 / 0.679
2q0k FADThioredoxin reductase 1.8.1.9 0.679
3ics FADCoenzyme A disulfide reductase / 0.679
5dbj FADFADH2-dependent halogenase PltA / 0.679
3bi5 FADPolyamine oxidase FMS1 / 0.678
4fk1 FADPutative thioredoxin reductase / 0.677
1gth FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.676
3lsh FADPyranose 2-oxidase / 0.676
3utf FDAUDP-galactopyranose mutase / 0.676
5fs9 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.676
2gqf FADUncharacterized protein HI_0933 / 0.675
3ad9 FADSubunit beta of sarcosine oxidase / 0.675
4g74 FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.675
4mok FADPyranose 2-oxidase / 0.675
1tdo FADL-amino-acid oxidase 1.4.3.2 0.674
3lsi FADPyranose 2-oxidase / 0.674
1lpf FADDihydrolipoyl dehydrogenase 1.8.1.4 0.673
1ve9 FADD-amino-acid oxidase 1.4.3.3 0.673
5fs8 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.673
4udq FAD5-(hydroxymethyl)furfural oxidase / 0.671
4wx1 FDAUDP-galactopyranose mutase / 0.671
5hxw FADL-amino acid deaminase / 0.671
2ign FADPyranose 2-oxidase / 0.669
4la1 FADThioredoxin glutathione reductase / 0.669
2xyo FADTetX family tetracycline inactivation enzyme / 0.668
4dna FADProbable glutathione reductase / 0.668
4guu FA9Lysine-specific histone demethylase 1B 1 0.668
4z2t FAD2-hydroxybiphenyl-3-monooxygenase / 0.668
1h81 FADPolyamine oxidase 1.5.3.14 0.667
4u8k FDAUDP-galactopyranose mutase / 0.667
1joa FADNADH peroxidase 1.11.1.1 0.666
1ng4 FADGlycine oxidase 1.4.3.19 0.666
3uth FDAUDP-galactopyranose mutase / 0.666
4u8n FDAUDP-galactopyranose mutase / 0.666
3v76 FDAUncharacterized protein / 0.665
1q1w FADPutidaredoxin reductase 1.18.1.5 0.664
2pr5 FMNBlue-light photoreceptor / 0.664
3cn8 FADPolyamine oxidase FMS1 / 0.664
3ish FADThioredoxin reductase 1.8.1.9 0.664
4ccq FADThioredoxin reductase / 0.664
4ccr FADThioredoxin reductase / 0.664
4eer FMNPhototropin-2 2.7.11.1 0.664
4g6g FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.664
4g9k FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.664
2a8x FADDihydrolipoyl dehydrogenase 1.8.1.4 0.663
4g73 FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.663
4yry FADGlutamate synthase, beta subunit / 0.663
1q1r FADPutidaredoxin reductase 1.18.1.5 0.662
2j3n FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.662
3r9u FADThioredoxin reductase / 0.662
2jb1 FADL-amino acid oxidase / 0.661
4gde FDAUDP-galactopyranose mutase / 0.661
3cgd FADCoenzyme A disulfide reductase / 0.660
4fwj FADLysine-specific histone demethylase 1B 1 0.660
3lxd FADFAD-dependent pyridine nucleotide-disulfide oxidoreductase / 0.659
2igo FADPyranose 2-oxidase / 0.658
3uov FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.658
4ech FADPolyamine oxidase FMS1 / 0.658
1zmd FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.657
3cnd FADPolyamine oxidase FMS1 / 0.657
3ef6 FADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component 1.18.1.3 0.657
2y48 FADLysine-specific histone demethylase 1A 1 0.656
3syi FADSulfide-quinone reductase / 0.656
2yvj FADFerredoxin reductase / 0.655
3fg2 FADPutative rubredoxin reductase / 0.655
3m13 FADMonomeric sarcosine oxidase 1.5.3.1 0.655
4cnj FADL-amino acid oxidase / 0.655
2yr5 FADPhenylalanine 2-monooxygenase precursor 1.13.12.9 0.654
3gd3 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.654
3zdn FADMonoamine oxidase N 1.4.3.4 0.654
4u8p FDAUDP-galactopyranose mutase / 0.654
1v59 FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.653
1z6l FADPolyamine oxidase FMS1 / 0.653
2jb2 FADL-amino acid oxidase / 0.653
2npx FADNADH peroxidase 1.11.1.1 0.653
1d4d FADFumarate reductase flavoprotein subunit 1.3.5.4 0.652
1nhp FADNADH peroxidase 1.11.1.1 0.652
3ka7 FADPutative oxidoreductase / 0.652
3qfb FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.652
4cnk FADL-amino acid oxidase / 0.652
4em3 FADCoenzyme A disulfide reductase / 0.652
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.652
2bi8 FADUDP-galactopyranose mutase 5.4.99.9 0.651
3bi2 FADPolyamine oxidase FMS1 / 0.651
4o5q FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.651
4u8o FDAUDP-galactopyranose mutase / 0.651
3q9t FAYUncharacterized protein / 0.650
4dsg FADUncharacterized protein / 0.650
4g6h FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.650
5ez7 FADProbable FAD-dependent oxidoreductase PA4991 / 0.650