2.300 Å
X-ray
2011-11-07
Name: | TetX family tetracycline inactivation enzyme |
---|---|
ID: | Q93L51_BACT4 |
AC: | Q93L51 |
Organism: | Bacteroides thetaiotaomicron |
Reign: | Bacteria |
TaxID: | 818 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 59.498 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | FAD |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.667 | 482.625 |
% Hydrophobic | % Polar |
---|---|
47.55 | 52.45 |
According to VolSite |
HET Code: | T1C |
---|---|
Formula: | C29H38N5O8 |
Molecular weight: | 584.641 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 48.12 % |
Polar Surface area: | 220.02 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 9 |
H-Bond Donors: | 5 |
Rings: | 4 |
Aromatic rings: | 1 |
Anionic atoms: | 3 |
Cationic atoms: | 2 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
-0.473381 | 10.4082 | 23.2039 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1 | NH2 | ARG- 213 | 3.17 | 169 | H-Bond (Protein Donor) |
C71 | SD | MET- 215 | 4.06 | 0 | Hydrophobic |
C6 | SD | MET- 215 | 4.44 | 0 | Hydrophobic |
C71 | CE1 | PHE- 224 | 4.3 | 0 | Hydrophobic |
C5 | CE1 | PHE- 224 | 3.25 | 0 | Hydrophobic |
C41 | CG | PHE- 224 | 4.39 | 0 | Hydrophobic |
C6 | CE1 | PHE- 224 | 3.56 | 0 | Hydrophobic |
N92 | OE2 | GLU- 367 | 3.44 | 134.87 | H-Bond (Ligand Donor) |
N92 | OE2 | GLU- 367 | 3.44 | 0 | Ionic (Ligand Cationic) |
C71 | SD | MET- 375 | 3.84 | 0 | Hydrophobic |
C72 | SD | MET- 375 | 3.29 | 0 | Hydrophobic |
C71 | CE1 | PHE- 382 | 3.39 | 0 | Hydrophobic |
O1C | O4 | FAD- 389 | 2.84 | 152.86 | H-Bond (Ligand Donor) |