sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.216 | |
| 3oiv | GNP | GTPase HRas | / | 1.107 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.103 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.097 | |
| 3oiw | GNP | GTPase HRas | / | 1.092 | |
| 2c5l | GTP | GTPase HRas | / | 1.087 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 1.080 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.079 | |
| 3rs0 | GNP | GTPase HRas | / | 1.078 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.077 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.075 | |
| 3i3s | GNP | GTPase HRas | / | 1.070 | |
| 4nyj | GNP | GTPase HRas | / | 1.070 | |
| 4nyi | GNP | GTPase HRas | / | 1.067 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 1.065 | |
| 4mit | GTP | Rho-related protein racC | / | 1.065 | |
| 3lbn | GNP | GTPase HRas | / | 1.062 | |
| 4l9w | GNP | GTPase HRas | / | 1.060 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.059 | |
| 4dlv | GNP | GTPase HRas | / | 1.059 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.058 | |
| 3v4f | GNP | GTPase HRas | / | 1.055 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.054 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.054 | |
| 1s1c | GNP | Transforming protein RhoA | / | 1.050 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.046 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.045 | |
| 3rsl | GNP | GTPase HRas | / | 1.045 | |
| 4dlw | GNP | GTPase HRas | / | 1.045 | |
| 3rs4 | GNP | GTPase HRas | / | 1.043 | |
| 3rs5 | GNP | GTPase HRas | / | 1.043 | |
| 4dlx | GNP | GTPase HRas | / | 1.043 | |
| 3rs7 | GNP | GTPase HRas | / | 1.042 | |
| 2rge | GNP | GTPase HRas | / | 1.041 | |
| 4dlz | GNP | GTPase HRas | / | 1.041 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.041 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.040 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.039 | |
| 3k8y | GNP | GTPase HRas | / | 1.039 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.038 | |
| 4dlt | GNP | GTPase HRas | / | 1.038 | |
| 4dls | GNP | GTPase HRas | / | 1.034 | |
| 2rgc | GNP | GTPase HRas | / | 1.028 | |
| 3lbi | GNP | GTPase HRas | / | 1.028 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.026 | |
| 3oiu | GNP | GTPase HRas | / | 1.026 | |
| 4g0n | GNP | GTPase HRas | / | 1.025 | |
| 5b2z | GNP | GTPase HRas | / | 1.025 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.023 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.022 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.019 | |
| 3l8y | GNP | GTPase HRas | / | 1.018 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 1.018 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.016 | |
| 4k81 | GTP | GTPase HRas | / | 1.016 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.015 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.009 | |
| 2rgb | GNP | GTPase HRas | / | 1.008 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 1.006 | |
| 2rgg | GNP | GTPase HRas | / | 1.005 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 1.001 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.999 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.998 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.995 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 0.994 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 0.990 | |
| 3lbh | GNP | GTPase HRas | / | 0.989 | |
| 3tgp | GNP | GTPase HRas | / | 0.989 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.988 | |
| 3ddc | GNP | GTPase HRas | / | 0.987 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.986 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.984 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.976 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.971 | |
| 4xvq | GNP | GTPase HRas | / | 0.971 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.967 | |
| 3k9l | GNP | GTPase HRas | / | 0.966 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.966 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.961 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.961 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.960 | |
| 4dvg | GSP | Rho family GTPase | / | 0.957 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.956 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.955 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.955 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.952 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.952 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.945 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.943 | |
| 3kud | GDP | GTPase HRas | / | 0.942 | |
| 4dsn | GCP | GTPase KRas | / | 0.941 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.937 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.933 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.931 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.928 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.928 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.926 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.924 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.922 | |
| 1lfd | GNP | GTPase HRas | / | 0.920 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.920 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.920 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.918 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.916 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.916 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.915 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.912 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.912 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.912 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.911 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.911 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.905 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.904 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.903 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.902 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.902 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.902 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.901 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.900 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.897 | |
| 3ref | GDP | Rho family GTPase | / | 0.897 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.896 | |
| 4q02 | GDP | GTPase KRas | / | 0.895 | |
| 4dso | GSP | GTPase KRas | / | 0.893 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.892 | |
| 4l9s | GDP | GTPase HRas | / | 0.891 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.891 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.889 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.888 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.888 | |
| 2cl6 | CAG | GTPase HRas | / | 0.886 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.884 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.884 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.883 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.881 | |
| 4q03 | GDP | GTPase KRas | / | 0.880 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.877 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.875 | |
| 4ql3 | GDP | GTPase KRas | / | 0.875 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.873 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.872 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.871 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.869 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.868 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.866 | |
| 4wa7 | GDP | GTPase KRas | / | 0.866 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.865 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.863 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.863 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.863 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.861 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.861 | |
| 4epw | GDP | GTPase KRas | / | 0.860 | |
| 4dsu | GDP | GTPase KRas | / | 0.859 | |
| 4epx | GDP | GTPase KRas | / | 0.859 | |
| 4tq9 | GDP | GTPase KRas | / | 0.859 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.858 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.857 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.856 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.854 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.852 | |
| 4lv6 | GDP | GTPase KRas | / | 0.847 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.844 | |
| 4l8g | GDP | GTPase KRas | / | 0.841 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.838 | |
| 4ldj | GDP | GTPase KRas | / | 0.838 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.836 | |
| 2ce2 | GDP | GTPase HRas | / | 0.834 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.834 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.834 | |
| 4lpk | GDP | GTPase KRas | / | 0.833 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.831 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.828 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.827 | |
| 3r9x | GNP | GTPase Era | / | 0.827 | |
| 4db1 | ANP | Myosin-7 | / | 0.826 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.825 | |
| 4obe | GDP | GTPase KRas | / | 0.825 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.825 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.823 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.822 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.819 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.818 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.816 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.816 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.815 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.815 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.814 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.814 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.814 | |
| 3ftq | GNP | Septin-2 | / | 0.814 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.813 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.813 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.812 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.809 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.809 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.808 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.807 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.806 | |
| 4lrw | GDP | GTPase KRas | / | 0.806 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.804 | |
| 5bn3 | ADP | NEQ263 | / | 0.804 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.803 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.802 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.801 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.801 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.800 | |
| 4luc | GDP | GTPase KRas | / | 0.800 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.799 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.796 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.795 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.794 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.793 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.790 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.790 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.787 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.786 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.786 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.784 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.783 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.780 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.780 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.779 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.779 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.777 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.775 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.773 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.773 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.773 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.773 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.772 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.772 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.772 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.771 | |
| 2fna | ADP | Uncharacterized protein | / | 0.770 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.769 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.769 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.767 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.767 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.767 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.765 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.764 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.763 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.763 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.762 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.762 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.761 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.761 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.760 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.760 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.759 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.759 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.759 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.759 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.757 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.755 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.755 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.754 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.753 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.753 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.753 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.753 | |
| 4xvr | GNP | GTPase HRas | / | 0.753 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.752 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.752 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.752 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.752 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.752 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.751 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.750 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.749 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.749 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.748 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.747 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.747 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.746 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.746 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.746 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.745 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.744 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.744 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.744 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.743 | |
| 4v02 | ATP | Site-determining protein | / | 0.741 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.740 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.739 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.739 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.738 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.738 | |
| 4jld | ADP | Adenylate kinase | / | 0.738 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.737 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.737 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.737 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.736 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.735 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.734 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.734 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.733 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.733 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.733 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.733 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.733 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.732 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.732 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.732 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.731 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.730 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.730 | |
| 5cyo | GDP | Septin-9 | / | 0.730 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.729 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.729 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.728 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.727 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.727 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.726 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.726 | |
| 1xmv | ADP | Protein RecA | / | 0.726 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.725 | |
| 2zts | ADP | Uncharacterized protein | / | 0.724 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.724 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.724 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.723 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.722 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.721 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.721 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.721 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.721 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.720 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.719 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.719 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.718 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.718 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.717 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.717 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.716 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.716 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.715 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.715 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.714 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.713 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.713 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.712 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.712 | |
| 4c30 | ANP | DNA helicase | / | 0.712 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.711 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.709 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.709 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.709 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.709 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.709 | |
| 1xms | ANP | Protein RecA | / | 0.708 | |
| 1nly | AGS | Cag alpha | / | 0.707 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.705 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.705 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.705 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.705 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.705 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.705 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.705 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.704 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.704 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.703 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.703 | |
| 3ieu | GDP | GTPase Era | / | 0.703 | |
| 4ike | ADP | Adenylate kinase | / | 0.703 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.703 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.702 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.701 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.701 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.699 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.698 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.698 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.697 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.697 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.696 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.695 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.695 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.694 | |
| 4jlo | ADP | Adenylate kinase | / | 0.694 | |
| 5ftc | ADP | TPR domain protein | / | 0.694 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.693 | |
| 1ank | ANP | Adenylate kinase | / | 0.692 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.691 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.691 | |
| 4yqf | GDP | Septin-9 | / | 0.690 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.689 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.689 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.689 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.689 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.688 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.688 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.687 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.687 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.686 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.686 | |
| 2zrj | AGS | Protein RecA | / | 0.686 | |
| 3d8b | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.686 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.686 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.686 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.686 | |
| 1q12 | ATP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.685 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.685 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.684 | |
| 4pl0 | ANP | Microcin-J25 export ATP-binding/permease protein McjD | / | 0.684 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.683 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.683 | |
| 3hpq | AP5 | Adenylate kinase | / | 0.683 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.682 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.682 | |
| 2whx | ADP | Genome polyprotein | 3.4.21.91 | 0.682 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.681 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.680 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.680 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.680 | |
| 2eck | ADP | Adenylate kinase | / | 0.679 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.679 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.678 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.678 | |
| 4c2u | ANP | DNA helicase | / | 0.678 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.678 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.677 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.676 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.676 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.676 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.675 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.674 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.674 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.673 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.670 | |
| 3r7w | GNP | GTP-binding protein GTR2 | / | 0.670 | |
| 4i1v | ADP | Dephospho-CoA kinase | / | 0.670 | |
| 1ake | AP5 | Adenylate kinase | / | 0.669 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.669 | |
| 4gyi | ADP | Uncharacterized protein | / | 0.669 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.668 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.668 | |
| 2oo7 | AP5 | Adenylate kinase | / | 0.668 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.667 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.666 | |
| 2pc9 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.665 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.665 | |
| 1zm7 | TTP | Deoxynucleoside kinase | / | 0.664 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.664 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.664 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.664 | |
| 1l2t | ATP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.663 | |
| 2ad5 | ADP | CTP synthase | / | 0.663 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.663 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.661 | |
| 5ftf | ADP | TPR domain protein | / | 0.661 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.660 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.660 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.660 | |
| 1rqj | IPE | Farnesyl diphosphate synthase | 2.5.1.10 | 0.659 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.658 | |
| 5dac | AGS | Uncharacterized protein | / | 0.658 | |
| 1e4v | AP5 | Adenylate kinase | / | 0.657 | |
| 3ez6 | ADP | Plasmid partition protein A | / | 0.656 | |
| 4ohw | ATP | Protein clpf-1 | / | 0.656 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.655 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.655 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.655 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.654 | |
| 4nu0 | AP5 | Adenylate kinase | / | 0.654 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.653 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.651 | |
| 4qfy | DCP | Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 | 3.1.5 | 0.651 | |
| 2x19 | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.650 | |
| 4p5f | AR6 | Inosine-uridine nucleoside N-ribohydrolase | / | 0.650 |