2.580 Å
X-ray
2008-10-22
| Name: | Plasmid partition protein A |
|---|---|
| ID: | PARA_ECOLX |
| AC: | P07620 |
| Organism: | Escherichia coli |
| Reign: | Bacteria |
| TaxID: | 562 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 34.708 |
|---|---|
| Number of residues: | 31 |
| Including | |
| Standard Amino Acids: | 29 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.620 | 259.875 |
| % Hydrophobic | % Polar |
|---|---|
| 63.64 | 36.36 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 60.67 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -48.738 | 29.0083 | 12.151 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1B | N | SER- 121 | 3.05 | 148.75 | H-Bond (Protein Donor) |
| O3A | N | SER- 121 | 3.17 | 135.45 | H-Bond (Protein Donor) |
| N7 | OG | SER- 121 | 3.15 | 163.42 | H-Bond (Protein Donor) |
| O2B | NZ | LYS- 122 | 3.79 | 0 | Ionic (Protein Cationic) |
| O2B | N | THR- 123 | 2.71 | 160.41 | H-Bond (Protein Donor) |
| O1A | N | VAL- 124 | 2.81 | 163.8 | H-Bond (Protein Donor) |
| C2' | CG2 | VAL- 124 | 3.72 | 0 | Hydrophobic |
| O4' | NZ | LYS- 316 | 3.37 | 149.66 | H-Bond (Protein Donor) |
| N6 | O | PRO- 344 | 2.89 | 164.03 | H-Bond (Ligand Donor) |
| N1 | N | LEU- 346 | 3.16 | 157.11 | H-Bond (Protein Donor) |