Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3bbp | GTP | Ras-related protein Rab-6A |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3bbp | GTP | Ras-related protein Rab-6A | / | 1.345 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.000 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 0.992 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.977 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.918 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 0.902 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.900 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 0.900 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 0.900 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 0.891 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.885 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.884 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.880 | |
| 4q02 | GDP | GTPase KRas | / | 0.877 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 0.874 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 0.874 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.873 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.872 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.871 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.865 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.860 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.854 | |
| 2c5l | GTP | GTPase HRas | / | 0.853 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.853 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.853 | |
| 4mit | GTP | Rho-related protein racC | / | 0.849 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.847 | |
| 4wa7 | GDP | GTPase KRas | / | 0.845 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.842 | |
| 4g0n | GNP | GTPase HRas | / | 0.841 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 0.841 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.838 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.836 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.835 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.834 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.833 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.833 | |
| 4dso | GSP | GTPase KRas | / | 0.832 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.832 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.830 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.829 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.826 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 0.825 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.823 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.821 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.819 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.819 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.816 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.815 | |
| 3k8y | GNP | GTPase HRas | / | 0.811 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 0.811 | |
| 4dlw | GNP | GTPase HRas | / | 0.808 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.808 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.806 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.804 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.803 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.801 | |
| 4l8g | GDP | GTPase KRas | / | 0.801 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.800 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.800 | |
| 3lbh | GNP | GTPase HRas | / | 0.799 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 0.797 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.797 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.796 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.796 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.794 | |
| 5b2z | GNP | GTPase HRas | / | 0.794 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.792 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.791 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.789 | |
| 3rs0 | GNP | GTPase HRas | / | 0.786 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.786 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.784 | |
| 2cl6 | CAG | GTPase HRas | / | 0.784 | |
| 3ddc | GNP | GTPase HRas | / | 0.783 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.783 | |
| 4nyi | GNP | GTPase HRas | / | 0.783 | |
| 3rs7 | GNP | GTPase HRas | / | 0.782 | |
| 4dlt | GNP | GTPase HRas | / | 0.782 | |
| 3tgp | GNP | GTPase HRas | / | 0.781 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.781 | |
| 3oiu | GNP | GTPase HRas | / | 0.780 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.779 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.778 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.777 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.776 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.775 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.775 | |
| 4dsu | GDP | GTPase KRas | / | 0.775 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.772 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.772 | |
| 3oiw | GNP | GTPase HRas | / | 0.772 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.771 | |
| 3rs4 | GNP | GTPase HRas | / | 0.771 | |
| 3rs5 | GNP | GTPase HRas | / | 0.771 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.771 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.770 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.769 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.769 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.769 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.769 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.769 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.769 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.768 | |
| 1lfd | GNP | GTPase HRas | / | 0.768 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.768 | |
| 4l9s | GDP | GTPase HRas | / | 0.767 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.766 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.766 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.766 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.766 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.766 | |
| 4dlv | GNP | GTPase HRas | / | 0.766 | |
| 4ql3 | GDP | GTPase KRas | / | 0.766 | |
| 2rge | GNP | GTPase HRas | / | 0.765 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.765 | |
| 4xvq | GNP | GTPase HRas | / | 0.765 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.762 | |
| 4dvg | GSP | Rho family GTPase | / | 0.762 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.761 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.760 | |
| 4xvu | ATP | ATPase GET3 | / | 0.760 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.758 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.757 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.756 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.755 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.755 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.755 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.753 | |
| 4lv6 | GDP | GTPase KRas | / | 0.753 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 0.751 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.751 | |
| 1ake | AP5 | Adenylate kinase | / | 0.750 | |
| 2ce2 | GDP | GTPase HRas | / | 0.750 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.750 | |
| 4epw | GDP | GTPase KRas | / | 0.750 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.749 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.749 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.748 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.748 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.747 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.747 | |
| 4k81 | GTP | GTPase HRas | / | 0.747 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.747 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.747 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.746 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.746 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.746 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.745 | |
| 3lbi | GNP | GTPase HRas | / | 0.745 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.745 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.745 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.744 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 0.744 | |
| 4dlx | GNP | GTPase HRas | / | 0.743 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.742 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.742 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.741 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.741 | |
| 2rgc | GNP | GTPase HRas | / | 0.741 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.741 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.740 | |
| 3ieu | GDP | GTPase Era | / | 0.738 | |
| 3oiv | GNP | GTPase HRas | / | 0.737 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.736 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.736 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.735 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.735 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.734 | |
| 4obe | GDP | GTPase KRas | / | 0.734 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.733 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.733 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.732 | |
| 3ref | GDP | Rho family GTPase | / | 0.732 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.732 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.731 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.729 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.728 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.728 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.728 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.727 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.727 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.727 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.727 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.727 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.725 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.725 | |
| 2ce7 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.724 | |
| 2eck | ADP | Adenylate kinase | / | 0.724 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.723 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.722 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.722 | |
| 3qi2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.721 | |
| 4ldj | GDP | GTPase KRas | / | 0.720 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.719 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.719 | |
| 2a5y | ATP | Cell death protein 4 | / | 0.719 | |
| 3ftq | GNP | Septin-2 | / | 0.719 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.718 | |
| 2zr9 | DTP | Protein RecA | / | 0.718 | |
| 4dlz | GNP | GTPase HRas | / | 0.718 | |
| 2fna | ADP | Uncharacterized protein | / | 0.717 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.717 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.717 | |
| 4nyj | GNP | GTPase HRas | / | 0.717 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.716 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.716 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.716 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.715 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.714 | |
| 2rgb | GNP | GTPase HRas | / | 0.714 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.714 | |
| 3v4f | GNP | GTPase HRas | / | 0.713 | |
| 4i1v | ADP | Dephospho-CoA kinase | / | 0.712 | |
| 4lrw | GDP | GTPase KRas | / | 0.712 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.711 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.711 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.710 | |
| 4tq9 | GDP | GTPase KRas | / | 0.710 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.709 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.709 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.707 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.707 | |
| 4luc | GDP | GTPase KRas | / | 0.707 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.707 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.706 | |
| 3uk6 | ADP | RuvB-like 2 | 3.6.4.12 | 0.706 | |
| 4dsn | GCP | GTPase KRas | / | 0.706 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.704 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.704 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.704 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.703 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.703 | |
| 4c2u | ANP | DNA helicase | / | 0.702 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.701 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.699 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.699 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.698 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.698 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.698 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.698 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.697 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.697 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.697 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.697 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.696 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.695 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.694 | |
| 3r9x | GNP | GTPase Era | / | 0.693 | |
| 4q03 | GDP | GTPase KRas | / | 0.693 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.692 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.692 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.692 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.691 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.691 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.691 | |
| 1kqm | ANP | Myosin heavy chain, striated muscle | / | 0.690 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.690 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.690 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.690 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.690 | |
| 3lbn | GNP | GTPase HRas | / | 0.689 | |
| 4iei | ADP | Gene 2 protein | / | 0.689 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.688 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.688 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.688 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.686 | |
| 2pc9 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.685 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.685 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.684 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.684 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.684 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.684 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.684 | |
| 3rsl | GNP | GTPase HRas | / | 0.684 | |
| 4cdg | ADP | Bloom syndrome protein | 3.6.4.12 | 0.680 | |
| 4wpu | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.680 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.679 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.679 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.678 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.678 | |
| 4qnr | ATP | Psp operon transcriptional activator | / | 0.678 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.677 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 0.677 | |
| 2xtn | GTP | GTPase IMAP family member 2 | / | 0.676 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.676 | |
| 4db1 | ANP | Myosin-7 | / | 0.676 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.675 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.675 | |
| 4dls | GNP | GTPase HRas | / | 0.675 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.674 | |
| 1mab | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.673 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 0.673 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.672 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.672 | |
| 4iij | GTP | Tubulin alpha-1B chain | / | 0.672 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.672 | |
| 1e4y | AP5 | Adenylate kinase | / | 0.671 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.670 | |
| 3l8y | GNP | GTPase HRas | / | 0.670 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.670 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.669 | |
| 4fid | GDP | G protein alpha subunit, putative | / | 0.669 | |
| 4h1v | GNP | Dynamin-1-like protein | 3.6.5.5 | 0.669 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.669 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.669 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.667 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.667 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.667 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.667 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.667 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.667 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.666 | |
| 4lpk | GDP | GTPase KRas | / | 0.666 | |
| 5ftf | ADP | TPR domain protein | / | 0.666 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.665 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.665 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.665 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.665 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.665 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.665 | |
| 3kjg | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.664 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.664 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.663 | |
| 4epx | GDP | GTPase KRas | / | 0.663 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.663 | |
| 4xvr | GNP | GTPase HRas | / | 0.663 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.662 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.662 | |
| 3k9l | GNP | GTPase HRas | / | 0.662 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.662 | |
| 2x19 | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.661 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.660 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.660 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.659 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.659 | |
| 2axn | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | / | 0.659 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.659 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.659 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.659 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.659 | |
| 1e0j | ANP | DNA primase/helicase | 2.7.7 | 0.658 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.658 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.658 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.657 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.657 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.656 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.656 | |
| 3i3s | GNP | GTPase HRas | / | 0.656 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.655 | |
| 2rgx | AP5 | Adenylate kinase | / | 0.655 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.655 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.655 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.654 | |
| 4o4l | GTP | Tubulin alpha-1B chain | / | 0.653 | |
| 4qfx | DGT | Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 | 3.1.5 | 0.653 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.652 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.651 | |
| 1nbm | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.651 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.651 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.651 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.651 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.651 |