sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1xtr | GNP | GTP-binding protein Rheb |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1xtr | GNP | GTP-binding protein Rheb | / | 1.200 | |
| 3tgp | GNP | GTPase HRas | / | 0.985 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 0.984 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.984 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 0.982 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 0.982 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 0.981 | |
| 2c5l | GTP | GTPase HRas | / | 0.976 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 0.974 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.973 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 0.973 | |
| 2rge | GNP | GTPase HRas | / | 0.970 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.970 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.969 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 0.969 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.965 | |
| 3lbi | GNP | GTPase HRas | / | 0.961 | |
| 3v4f | GNP | GTPase HRas | / | 0.961 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.960 | |
| 3i3s | GNP | GTPase HRas | / | 0.959 | |
| 2rgg | GNP | GTPase HRas | / | 0.957 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.956 | |
| 3k8y | GNP | GTPase HRas | / | 0.954 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.950 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.948 | |
| 3oiw | GNP | GTPase HRas | / | 0.948 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.947 | |
| 3oiv | GNP | GTPase HRas | / | 0.947 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 0.946 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 0.946 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 0.946 | |
| 3rs0 | GNP | GTPase HRas | / | 0.946 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.946 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.945 | |
| 2rgb | GNP | GTPase HRas | / | 0.944 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.943 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 0.943 | |
| 3rs5 | GNP | GTPase HRas | / | 0.942 | |
| 4dls | GNP | GTPase HRas | / | 0.942 | |
| 4dlw | GNP | GTPase HRas | / | 0.941 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.940 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.940 | |
| 3lbn | GNP | GTPase HRas | / | 0.940 | |
| 3oiu | GNP | GTPase HRas | / | 0.940 | |
| 5b2z | GNP | GTPase HRas | / | 0.940 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 0.937 | |
| 3lbh | GNP | GTPase HRas | / | 0.936 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.935 | |
| 3rsl | GNP | GTPase HRas | / | 0.934 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.932 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.932 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.931 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.930 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.929 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.929 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 0.928 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.928 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.928 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.926 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.924 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.921 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.921 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.920 | |
| 4g0n | GNP | GTPase HRas | / | 0.918 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.917 | |
| 3ddc | GNP | GTPase HRas | / | 0.913 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.913 | |
| 4l9w | GNP | GTPase HRas | / | 0.913 | |
| 4nyi | GNP | GTPase HRas | / | 0.910 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 0.909 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.909 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.908 | |
| 3l8y | GNP | GTPase HRas | / | 0.908 | |
| 4nyj | GNP | GTPase HRas | / | 0.906 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.906 | |
| 1lfd | GNP | GTPase HRas | / | 0.904 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 0.904 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.903 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 0.903 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.902 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.900 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.900 | |
| 4q02 | GDP | GTPase KRas | / | 0.900 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.900 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.899 | |
| 4k81 | GTP | GTPase HRas | / | 0.899 | |
| 4l9s | GDP | GTPase HRas | / | 0.898 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.896 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.896 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.894 | |
| 4lpk | GDP | GTPase KRas | / | 0.890 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.888 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.888 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.888 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.888 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 0.884 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.884 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.883 | |
| 3k9l | GNP | GTPase HRas | / | 0.883 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.880 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.878 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.877 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.875 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.874 | |
| 4epw | GDP | GTPase KRas | / | 0.873 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.872 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.870 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.870 | |
| 4dlv | GNP | GTPase HRas | / | 0.870 | |
| 3rs7 | GNP | GTPase HRas | / | 0.869 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.868 | |
| 4tq9 | GDP | GTPase KRas | / | 0.867 | |
| 4epx | GDP | GTPase KRas | / | 0.866 | |
| 3kud | GDP | GTPase HRas | / | 0.864 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.863 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.863 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.862 | |
| 4lv6 | GDP | GTPase KRas | / | 0.862 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.861 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.860 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.860 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.860 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.859 | |
| 4ql3 | GDP | GTPase KRas | / | 0.858 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.857 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.856 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.855 | |
| 4l8g | GDP | GTPase KRas | / | 0.855 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.853 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.852 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.852 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.852 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.851 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.848 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.848 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.848 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.847 | |
| 4dsn | GCP | GTPase KRas | / | 0.846 | |
| 4mit | GTP | Rho-related protein racC | / | 0.845 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.843 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.842 | |
| 4obe | GDP | GTPase KRas | / | 0.842 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.841 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.840 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.840 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.840 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.839 | |
| 4q03 | GDP | GTPase KRas | / | 0.838 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.837 | |
| 4xvr | GNP | GTPase HRas | / | 0.837 | |
| 3r9x | GNP | GTPase Era | / | 0.836 | |
| 4dsu | GDP | GTPase KRas | / | 0.836 | |
| 4wa7 | GDP | GTPase KRas | / | 0.836 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.835 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.835 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.835 | |
| 3ftq | GNP | Septin-2 | / | 0.835 | |
| 4dlt | GNP | GTPase HRas | / | 0.835 | |
| 4xvq | GNP | GTPase HRas | / | 0.835 | |
| 2rgc | GNP | GTPase HRas | / | 0.833 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.832 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.828 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.828 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.827 | |
| 4dso | GSP | GTPase KRas | / | 0.826 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.825 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.824 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.824 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.821 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.821 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.821 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.820 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.819 | |
| 4dlx | GNP | GTPase HRas | / | 0.818 | |
| 4dlz | GNP | GTPase HRas | / | 0.817 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.816 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.816 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.815 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.814 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.813 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.813 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.812 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.811 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.808 | |
| 2cl6 | CAG | GTPase HRas | / | 0.807 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.807 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.807 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.806 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.806 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.805 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.804 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.802 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.801 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.801 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.800 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.799 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.797 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.796 | |
| 4dvg | GSP | Rho family GTPase | / | 0.796 | |
| 4luc | GDP | GTPase KRas | / | 0.796 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.793 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.793 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.792 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.787 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.787 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.786 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.785 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.785 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.785 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.785 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.781 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.779 | |
| 1ank | ANP | Adenylate kinase | / | 0.777 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.777 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.776 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.776 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.775 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.775 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.774 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.773 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.773 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.772 | |
| 3ref | GDP | Rho family GTPase | / | 0.772 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.771 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.771 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.770 | |
| 4lrw | GDP | GTPase KRas | / | 0.769 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.769 | |
| 4v02 | ATP | Site-determining protein | / | 0.769 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.768 | |
| 2ce2 | GDP | GTPase HRas | / | 0.767 | |
| 3rs4 | GNP | GTPase HRas | / | 0.767 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.766 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.766 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.765 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.763 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.763 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.763 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.763 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.763 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.762 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.761 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.760 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.759 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.759 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.759 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.759 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.758 | |
| 2xtn | GTP | GTPase IMAP family member 2 | / | 0.757 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.757 | |
| 4yqf | GDP | Septin-9 | / | 0.757 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.756 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.756 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.753 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.753 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.751 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.749 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.749 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.749 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.749 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.748 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.747 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.747 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.747 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.747 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.747 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.746 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.745 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.745 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.745 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.744 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.744 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.744 | |
| 1xms | ANP | Protein RecA | / | 0.743 | |
| 4db1 | ANP | Myosin-7 | / | 0.743 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.742 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.742 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.740 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.739 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.738 | |
| 1xmv | ADP | Protein RecA | / | 0.737 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.737 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.737 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.736 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.736 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.735 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.735 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.735 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.735 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.735 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.734 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.733 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.733 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.733 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.733 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.732 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.732 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.732 | |
| 2fna | ADP | Uncharacterized protein | / | 0.731 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.731 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.729 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.727 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.727 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.726 | |
| 4ldj | GDP | GTPase KRas | / | 0.725 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.724 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.724 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.724 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.724 | |
| 3ieu | GDP | GTPase Era | / | 0.724 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.724 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.723 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.723 | |
| 2zts | ADP | Uncharacterized protein | / | 0.723 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.723 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.722 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.722 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.722 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.722 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.722 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.722 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.721 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.721 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.720 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.720 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.720 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.720 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.720 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.719 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.719 | |
| 2zrj | AGS | Protein RecA | / | 0.719 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.719 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.719 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.719 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.718 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.718 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.718 | |
| 5cyo | GDP | Septin-9 | / | 0.718 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.717 | |
| 5bn3 | ADP | NEQ263 | / | 0.717 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.716 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.716 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.716 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.715 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.714 | |
| 2eck | ADP | Adenylate kinase | / | 0.714 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.714 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.714 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.713 | |
| 5ftc | ADP | TPR domain protein | / | 0.712 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.710 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.710 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.710 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.709 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.708 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.708 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.707 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.707 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.706 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.706 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.705 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.705 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.705 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.703 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.703 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.703 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.703 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.702 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.702 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.702 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.701 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.701 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.701 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.700 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.700 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.700 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.700 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.699 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.699 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.699 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.697 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.697 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.696 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.696 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.696 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.695 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.694 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.694 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.690 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.690 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.690 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.690 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.688 | |
| 1g6o | ADP | Cag alpha | / | 0.687 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.685 | |
| 3qbv | GDP | Cell division control protein 42 homolog | / | 0.685 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.684 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.684 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.684 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.684 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.684 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.684 | |
| 1ake | AP5 | Adenylate kinase | / | 0.683 | |
| 4ike | ADP | Adenylate kinase | / | 0.683 | |
| 2ad5 | ADP | CTP synthase | / | 0.682 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.681 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.681 | |
| 4xvu | ATP | ATPase GET3 | / | 0.681 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.680 | |
| 2zro | ADP | Protein RecA | / | 0.680 | |
| 3l1c | ADP | Protein claret segregational | / | 0.680 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.678 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.678 | |
| 4fid | GDP | G protein alpha subunit, putative | / | 0.678 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.678 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.676 | |
| 5da9 | AGS | Uncharacterized protein | / | 0.673 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.672 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.672 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.672 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.671 | |
| 4wpu | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.671 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.670 | |
| 2xsz | ATP | RuvB-like 2 | 3.6.4.12 | 0.668 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.668 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.667 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.667 | |
| 1nly | AGS | Cag alpha | / | 0.667 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.666 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.666 | |
| 3kb1 | ADP | Iron-sulfur cluster carrier protein | / | 0.666 | |
| 3sop | GDP | Neuronal-specific septin-3 | / | 0.665 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.664 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.664 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.663 | |
| 4jlo | ADP | Adenylate kinase | / | 0.663 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.662 | |
| 2jcs | TTP | Deoxynucleoside kinase | / | 0.662 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.661 | |
| 4x8l | AP5 | Adenylate kinase | / | 0.661 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.661 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.660 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.660 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.660 | |
| 4h5d | YS4 | Farnesyl pyrophosphate synthase | 2.5.1.10 | 0.658 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.657 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.657 | |
| 2r6g | ATP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.657 | |
| 4h5c | YS4 | Farnesyl pyrophosphate synthase | 2.5.1.10 | 0.657 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.656 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.656 | |
| 3thy | ADP | DNA mismatch repair protein Msh2 | / | 0.656 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.655 | |
| 1e32 | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.654 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.653 | |
| 5ftf | ADP | TPR domain protein | / | 0.653 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.652 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.652 | |
| 4ohw | ATP | Protein clpf-1 | / | 0.652 | |
| 4xgu | ADP | Putative pachytene checkpoint protein 2 | / | 0.652 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.651 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.651 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.650 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.650 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.650 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.650 | |
| 5cyp | GSP | Septin-9 | / | 0.650 |