Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1v2hGUNPurine nucleoside phosphorylase2.4.2.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1v2hGUNPurine nucleoside phosphorylase2.4.2.11.000
1v3q2DIPurine nucleoside phosphorylase2.4.2.10.600
1pf7IMHPurine nucleoside phosphorylase2.4.2.10.577
3k8o229Purine nucleoside phosphorylase2.4.2.10.571
1fxuGU7Purine nucleoside phosphorylase2.4.2.10.563
1yryMSGPurine nucleoside phosphorylase2.4.2.10.554
2a0xDIHPurine nucleoside phosphorylase2.4.2.10.550
2on6IMHPurine nucleoside phosphorylase2.4.2.10.538
1a9sNOSPurine nucleoside phosphorylase2.4.2.10.537
1rctNOSPurine nucleoside phosphorylase2.4.2.10.529
1pwyAC2Purine nucleoside phosphorylase2.4.2.10.528
1a9p9DIPurine nucleoside phosphorylase2.4.2.10.525
3k8q22APurine nucleoside phosphorylase2.4.2.10.519
1rt9IMHPurine nucleoside phosphorylase2.4.2.10.515
1v48HA1Purine nucleoside phosphorylase2.4.2.10.511
1rfgGMPPurine nucleoside phosphorylase2.4.2.10.509
1rszDIHPurine nucleoside phosphorylase2.4.2.10.509
3f8wADNPurine nucleoside phosphorylase/0.505
4b66NAPL-ornithine N(5)-monooxygenase/0.504
3bgsDIHPurine nucleoside phosphorylase2.4.2.10.501
2a0yDIHPurine nucleoside phosphorylase2.4.2.10.498
4earIM5Purine nucleoside phosphorylase2.4.2.10.497
2a0wDIHPurine nucleoside phosphorylase2.4.2.10.496
4kbyC2EStimulator of interferon genes protein/0.494
1b8nIMGPurine nucleoside phosphorylase2.4.2.10.493
1c3x8IGPurine nucleoside phosphorylase2.4.2.10.489
1rr6IMHPurine nucleoside phosphorylase2.4.2.10.488
1zdwFLVPrenyltransferase/0.488
2p4sDIHAGAP005945-PA/0.487
1lv89PPPurine nucleoside phosphorylase2.4.2.10.486
5irnADPNucleotide binding oligomerization domain containing 2/0.484
2anmCDOProthrombin3.4.21.50.483
2fw3BUICarnitine O-palmitoyltransferase 2, mitochondrial2.3.1.210.482
2e15SAHDiphthine synthase/0.481
2oc4IMHPurine nucleoside phosphorylase2.4.2.10.480
3lpiZ74Beta-secretase 13.4.23.460.480
3uzwNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.479
4oztP1AEcdysone receptor, putative/0.479
3q9bB3NAcetylpolyamine amidohydrolase/0.478
4bb3KKAIsopenicillin N synthase1.21.3.10.478
5dp2NAPCurF/0.478
1oc1ASVIsopenicillin N synthase1.21.3.10.476
2hveADPNucleoside diphosphate kinase A2.7.4.60.476
1o8cNDPProbable acrylyl-CoA reductase AcuI1.3.1.840.475
2ivpATPtRNA N6-adenosine threonylcarbamoyltransferase/0.475
4h6zACOAlpha-tubulin N-acetyltransferase 1/0.475
2xvfFADPutative flavin-containing monooxygenase/0.474
4fco0U4Beta-secretase 13.4.23.460.474
1hb1OCVIsopenicillin N synthase1.21.3.10.473
1w06W05Isopenicillin N synthase1.21.3.10.473
2xlpFADPutative flavin-containing monooxygenase/0.473
3fp0FP015-O-acetyltransferase/0.473
4bfxZVXPantothenate kinase2.7.1.330.472
3dy8IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.471
3fazNOSPurine nucleoside phosphorylase/0.471
3lpkZ76Beta-secretase 13.4.23.460.471
3vg10GTBeta-secretase 13.4.23.460.471
4ag7COAGlucosamine 6-phosphate N-acetyltransferase/0.471
4twnB96Ephrin type-A receptor 32.7.10.10.471
2iviACWIsopenicillin N synthase1.21.3.10.470
1nbiSAMGlycine N-methyltransferase2.1.1.200.469
2gs9SAHUncharacterized protein/0.469
3udn09BBeta-secretase 13.4.23.460.469
2vbdV10Isopenicillin N synthase1.21.3.10.468
2vkmBSDBeta-secretase 13.4.23.460.468
4q71FADBifunctional protein PutA/0.468
1pqc444Oxysterols receptor LXR-beta/0.467
1yc2NADNAD-dependent protein deacylase 2/0.467
3aosJH2Hemolymph juvenile hormone binding protein/0.467
2x7hPFNProstaglandin reductase 310.466
3vf60H6Glucokinase2.7.1.20.466
4ubvCOASteroid 3-ketoacyl-CoA thiolase/0.466
5emhNAPIridoid synthase1.3.1.990.466
5hwoHMGHydroxymethylglutaryl-CoA synthase/0.466
1pq944BOxysterols receptor LXR-beta/0.465
2yneYNEGlycylpeptide N-tetradecanoyltransferase/0.465
2zatNAPDehydrogenase/reductase SDR family member 41.1.1.1840.465
1tllFMNNitric oxide synthase, brain1.14.13.390.464
2dshSAHDiphthine synthase/0.464
2q7oIMHPurine nucleoside phosphorylase2.4.2.10.464
2xysSY9Soluble acetylcholine receptor/0.464
2ivnANPtRNA N6-adenosine threonylcarbamoyltransferase/0.463
4dpi0N1Beta-secretase 13.4.23.460.463
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.462
1qiqACCIsopenicillin N synthase1.21.3.10.462
2givACOHistone acetyltransferase KAT8/0.462
2hdjNDPAldo-keto reductase family 1 member C2/0.462
2rlcCHDCholoylglycine hydrolase3.5.1.240.462
3h2sNDPPutative NADH-flavin reductase/0.462
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.462
1g63FMNEpidermin decarboxylase4.1.10.461
1jtqLY3Thymidylate synthase/0.461
2irzI02Beta-secretase 13.4.23.460.461
2jb4A14Isopenicillin N synthase1.21.3.10.461
4rvgTYDD-mycarose 3-C-methyltransferase/0.461
1hb3SCVIsopenicillin N synthase1.21.3.10.460
1hfqMOTDihydrofolate reductase1.5.1.30.460
2o1xTDP1-deoxy-D-xylulose-5-phosphate synthase2.2.1.70.460
2viyVG3Beta-secretase 13.4.23.460.460
3iexGMPPurine nucleoside phosphorylase/0.460
3toxNAPPutative oxidoreductase/0.460
2abbFMNPentaerythritol tetranitrate reductase/0.459
2vczVC3Hematopoietic prostaglandin D synthase/0.459
3cltFADElectron transfer flavoprotein subunit alpha/0.459
3gkjHC3Niemann-Pick C1 protein/0.459
3k1wBFXRenin3.4.23.150.459
3otfCMPPotassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4/0.459
3rsv3RSBeta-secretase 13.4.23.460.459
3zkyWT4Isopenicillin N synthase1.21.3.10.459
5fm7ADPRuvB-like helicase/0.459
2y6fM9FIsopenicillin N synthase1.21.3.10.458
3lpjZ75Beta-secretase 13.4.23.460.458
4b65NDPL-ornithine N(5)-monooxygenase/0.458
4jx1CAHCamphor 5-monooxygenase1.14.15.10.458
1nbhSAMGlycine N-methyltransferase2.1.1.200.457
2vbpVB1Isopenicillin N synthase1.21.3.10.457
3cic316Beta-secretase 13.4.23.460.457
3pefNAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase/0.457
3zeiAWHO-acetylserine sulfhydrylase/0.457
4ambDUDPutative glycosyl transferase/0.457
4u0sADPAdenosine monophosphate-protein transferase FICD2.7.7.n10.457
3f0aACOSpermidine N(1)-acetyltransferase/0.456
3udk095Beta-secretase 13.4.23.460.456
3zoiM2WIsopenicillin N synthase1.21.3.10.456
4opgFDAConserved Archaeal protein/0.456
1g6kNADGlucose 1-dehydrogenase1.1.1.470.455
1s3uTQDDihydrofolate reductase1.5.1.30.455
2q1sNAIPutative nucleotide sugar epimerase/ dehydratase/0.455
4hkfACOAlpha-tubulin N-acetyltransferase 1/0.455
4jjiNADAlcohol dehydrogenase class-3/0.455
4jlk1NODeoxycytidine kinase2.7.1.740.455
4zzjCNANAD-dependent protein deacetylase sirtuin-13.5.10.455
1d3pBT3Prothrombin3.4.21.50.454
1o97FADElectron transfer flavoprotein subunit alpha/0.454
1q0zAKAAclacinomycin methylesterase RdmC3.1.1.950.454
2jkvNAP6-phosphogluconate dehydrogenase, decarboxylating1.1.1.440.454
2wezZYEBeta-secretase 13.4.23.460.454
3atyFMNProstaglandin F2a synthase/0.454
3mpiFADGlutaryl-CoA dehydrogenase1.3.99.320.454
3ndjJHZMethyltransferase/0.454
4b63NAPL-ornithine N(5)-monooxygenase/0.454
4gs4ACOAlpha-tubulin N-acetyltransferase 1/0.454
4n3l2FNProthrombin3.4.21.50.454
4qaiFMNNADPH dehydrogenase/0.454
1bk0ACVIsopenicillin N synthase1.21.3.10.453
1bxkNADdTDP-glucose 4,6-dehydratase 2/0.453
1f8gNADNAD(P) transhydrogenase subunit alpha part 11.6.1.20.453
1jwtBLIProthrombin3.4.21.50.453
1lvu9PPPurine nucleoside phosphorylase2.4.2.10.453
1nzq162Prothrombin3.4.21.50.453
2jgsBTNAvidin/0.453
4b68NAPL-ornithine N(5)-monooxygenase/0.453
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.453
4h3f10OBeta-secretase 13.4.23.460.453
4m52FADDihydrolipoyl dehydrogenase1.8.1.40.453
1e0aGNPCell division control protein 42 homolog/0.452
1t4v14AProthrombin3.4.21.50.452
1u3dFADCryptochrome-1/0.452
2pb5SAHDiphthine synthase/0.452
2zb3NDPProstaglandin reductase 21.3.1.480.452
2ztmNADD(-)-3-hydroxybutyrate dehydrogenase/0.452
3bgxMEFThymidylate synthase/0.452
3dy85GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.452
3f1kNAPUncharacterized oxidoreductase YciK10.452
3ohh3HHBeta-secretase 13.4.23.460.452
3vydVYDRenin3.4.23.150.452
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.452
4e2dFMNDehydrogenase/0.452
4esoNAPPutative oxidoreductase/0.452
4irnFADAnaB/0.452
5jsfNAD17-beta-hydroxysteroid dehydrogenase 141.1.10.452
1knrFADL-aspartate oxidase1.4.3.160.451
1sd2MTHS-methyl-5'-thioadenosine phosphorylase/0.451
2dhfDZFDihydrofolate reductase1.5.1.30.451
2f2sCOAAcetyl-CoA acetyltransferase, mitochondrial2.3.1.90.451
2pckSAHDiphthine synthase/0.451
2rd2QSIGlutamine--tRNA ligase6.1.1.180.451
2v13C40Renin3.4.23.150.451
2ylzFADPhenylacetone monooxygenase1.14.13.920.451
3f3sNADLambda-crystallin homolog/0.451
3uicNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.451
4e32DWNMethyltransferase/0.451
4uyf73BBromodomain-containing protein 2/0.451
4xguADPPutative pachytene checkpoint protein 2/0.451
1opmIYGPeptidyl-glycine alpha-amidating monooxygenase1.14.17.30.450
2gesCOKPantothenate kinase2.7.1.330.450
2vkeTACTetracycline repressor protein class D/0.450
3udj092Beta-secretase 13.4.23.460.450
4hdgGTPGenome polyprotein2.7.7.480.450
4uugPXGBranched-chain amino acid aminotransferase, putative/0.450
1dljUGAUDP-glucose 6-dehydrogenase/0.449
1h50FMNPentaerythritol tetranitrate reductase/0.449
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.449
1qjfACSIsopenicillin N synthase1.21.3.10.449
2a58RBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.449
2b03TUDPhospholipase A2, major isoenzyme3.1.1.40.449
2p5cSAHDiphthine synthase/0.449
2zjmF1MBeta-secretase 13.4.23.460.449
2ztlNADD(-)-3-hydroxybutyrate dehydrogenase/0.449
3qwbNDPProbable quinone oxidoreductase1.6.5.50.449
4c49HCYCorticosteroid-binding globulin/0.449
4gutFADLysine-specific histone demethylase 1B10.449
4x7vMIVMycinamicin III 3''-O-methyltransferase2.1.1.2370.449
1blzACVIsopenicillin N synthase1.21.3.10.448
1zxnADPDNA topoisomerase 2-alpha5.99.1.30.448
2i4pDRHPeroxisome proliferator-activated receptor gamma/0.448
2nq8ZIDEnoyl-ACP reductase/0.448
3drcMTXDihydrofolate reductase1.5.1.30.448
3hl0NADMaleylacetate reductase/0.448
3jziJZLBiotin carboxylase6.3.4.140.448
4eplJAIJasmonic acid-amido synthetase JAR16.3.20.448
4u0mGTPCyclic GMP-AMP synthase/0.448
5dcyNAPIridoid synthase1.3.1.990.448
1obnASVIsopenicillin N synthase1.21.3.10.447
1oj4CDM4-diphosphocytidyl-2-C-methyl-D-erythritol kinase2.7.1.1480.447
1txtCAAHMG-CoA synthase/0.447
2bfaCB3Pteridine reductase 11.5.1.330.447
2e07SAHDiphthine synthase/0.447
2pg0FADAcyl-CoA dehydrogenase/0.447
2wyaHMGHydroxymethylglutaryl-CoA synthase, mitochondrial2.3.3.100.447
3ggs2FDPurine nucleoside phosphorylase2.4.2.10.447
3gkiCLRNiemann-Pick C1 protein/0.447
3qbhQBHBeta-secretase 13.4.23.460.447
4zzi1NSNAD-dependent protein deacetylase sirtuin-13.5.10.447
2e16SAHDiphthine synthase/0.446
2vceU2FUDP-glycosyltransferase 72B1/0.446
2w3mFOLDihydrofolate reductase1.5.1.30.446
2x90EALAngiotensin-converting enzyme3.4.15.10.446
2y0mACOHistone acetyltransferase KAT8/0.446
2yozOVE2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.446
3lsiFADPyranose 2-oxidase/0.446
4a87NARMajor pollen allergen Bet v 1-A/0.446
4bbxLKFcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.446
4m2bUPGUDP-glucose pyrophosphorylase/0.446
5cb3APRO-acetyl-ADP-ribose deacetylase/0.446
1cg6MTAS-methyl-5'-thioadenosine phosphorylase/0.445
2cy2ACOProbable acetyltransferase/0.445
2dgnDOIAdenylosuccinate synthetase isozyme 1/0.445
2ekaSAHDiphthine synthase/0.445
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.445
2oc9IMHPurine nucleoside phosphorylase2.4.2.10.445
2yd0BESEndoplasmic reticulum aminopeptidase 13.4.110.445
3d3wNAPL-xylulose reductase1.1.1.100.445
3gdpFAD(R)-mandelonitrile lyase 24.1.2.100.445
3up0D7SaceDAF-12/0.445
4gi5FADPutative NAD(P)H dehydrogenase (Quinone)/0.445
4iaq2GM5-hydroxytryptamine receptor 1B/0.445
4o9cCOAAcetyl-CoA acetyltransferase2.3.1.90.445
1t4u81AProthrombin3.4.21.50.444
1wl4COAAcetyl-CoA acetyltransferase, cytosolic2.3.1.90.444
2qu6857Vascular endothelial growth factor receptor 22.7.10.10.444
3atzFMNProstaglandin F2a synthase/0.444
3c1kT15Prothrombin3.4.21.50.444
3sf6FDAGlutaryl-CoA dehydrogenase/0.444
4qe6JN3Bile acid receptor/0.444
4wfr2AM2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.444
4xo7NAPAldo-keto reductase family 1 member C2/0.444
1lcbTMPThymidylate synthase/0.443
1ps9MDE2,4-dienoyl-CoA reductase1.3.1.340.443
1tilATPAnti-sigma F factor/0.443
1uzwCDHIsopenicillin N synthase1.21.3.10.443
1ypeUIPProthrombin3.4.21.50.443
2cduFADNADH oxidase/0.443
2ea2F77Methionine aminopeptidase 2/0.443
2f3eAXQBeta-secretase 13.4.23.460.443
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.443
2igoFADPyranose 2-oxidase/0.443
2iodMYCDihydroflavonol 4-reductase1.1.1.2190.443
2oahQINBeta-secretase 13.4.23.460.443
2p9cNAID-3-phosphoglycerate dehydrogenase1.1.1.950.443
2wf0ZY0Beta-secretase 13.4.23.460.443
2zrzFNRIsopentenyl-diphosphate delta-isomerase/0.443
3l77NJPShort-chain alcohol dehydrogenase/0.443
4lcjNADC-terminal-binding protein 2/0.443
4xgiNADGlutamate dehydrogenase/0.443
1knpFADL-aspartate oxidase1.4.3.160.442
1mvtDTMDihydrofolate reductase1.5.1.30.442
2eglSAHDiphthine synthase/0.442
2fzeAPRAlcohol dehydrogenase class-31.1.1.10.442
2y05NAPProstaglandin reductase 1/0.442
2ylrNAPPhenylacetone monooxygenase1.14.13.920.442
3cluFADElectron transfer flavoprotein subunit alpha/0.442
3d2mCOAAmino-acid acetyltransferase/0.442
3dm6757Beta-secretase 13.4.23.460.442
3jynNDPQuinone oxidoreductase/0.442
4ayy9MXProthrombin3.4.21.50.442
4lxa1YSBeta-secretase 13.4.23.460.442
4u9yCOAAlpha-tubulin N-acetyltransferase 1/0.442
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.441
1k27MTMS-methyl-5'-thioadenosine phosphorylase/0.441
1sd1FMCS-methyl-5'-thioadenosine phosphorylase/0.441
1zgi382Prothrombin3.4.21.50.441
2dv5SAHDiphthine synthase/0.441
2p83MR0Beta-secretase 13.4.23.460.441
2zb8IMNProstaglandin reductase 21.3.1.480.441
3fktSIIBeta-secretase 13.4.23.460.441
3fr5I4AFatty acid-binding protein, adipocyte/0.441
3ivmZPRProlyl endopeptidase/0.441
3r6sCMPCRP-like cAMP-activated global transcriptional regulator/0.441
3r9uFADThioredoxin reductase/0.441
4a86H35Major pollen allergen Bet v 1-A/0.441
4b78KGGBeta-secretase 13.4.23.460.441
4eh8IRGMitogen-activated protein kinase 14/0.441
4uwmFMN3,6-diketocamphane 1,6 monooxygenase1.14.130.441
5kf9COAPredicted acetyltransferase/0.441
1sdwIYTPeptidyl-glycine alpha-amidating monooxygenase1.14.17.30.440
1x1dSAHC-20 methyltransferase/0.440
2bktRPFRenin3.4.23.150.440
2nnlNAPDihydroflavonol 4-reductase1.1.1.2190.440
2vijC44Beta-secretase 13.4.23.460.440
3f03FMNPentaerythritol tetranitrate reductase/0.440
3l7dDK5Glycogen phosphorylase, muscle form2.4.1.10.440
3mt817TGlycogen phosphorylase, muscle form2.4.1.10.440
3u9fCLMChloramphenicol acetyltransferase2.3.1.280.440
3w6hAZMCarbonic anhydrase 14.2.1.10.440
4b67NAPL-ornithine N(5)-monooxygenase/0.440
4dquNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.440
4e2bFMNDehydrogenase/0.440
4h3j10WBeta-secretase 13.4.23.460.440
4k9oTPPBenzoylformate decarboxylase4.1.1.70.440