2.200 Å
X-ray
2000-09-27
Name: | Purine nucleoside phosphorylase |
---|---|
ID: | PNPH_BOVIN |
AC: | P55859 |
Organism: | Bos taurus |
Reign: | Eukaryota |
TaxID: | 9913 |
EC Number: | 2.4.2.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 24.851 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.013 | 577.125 |
% Hydrophobic | % Polar |
---|---|
45.61 | 54.39 |
According to VolSite |
HET Code: | GU7 |
---|---|
Formula: | C10H17N6O3 |
Molecular weight: | 269.280 g/mol |
DrugBank ID: | DB02391 |
Buried Surface Area: | 71.55 % |
Polar Surface area: | 142.37 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 5 |
Rings: | 2 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
73.9147 | 46.7727 | 51.2957 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C16 | CZ | TYR- 88 | 4.31 | 0 | Hydrophobic |
O17 | OH | TYR- 88 | 2.91 | 147.27 | H-Bond (Protein Donor) |
C14 | CZ | PHE- 200 | 3.75 | 0 | Hydrophobic |
N1 | OE1 | GLU- 201 | 2.8 | 173.7 | H-Bond (Ligand Donor) |
N2 | OD1 | ASN- 243 | 3.39 | 152.66 | H-Bond (Ligand Donor) |
N3 | ND2 | ASN- 243 | 2.62 | 150.2 | H-Bond (Protein Donor) |
C14 | CB | HIS- 257 | 4.44 | 0 | Hydrophobic |