2.300 Å
X-ray
2014-11-26
Name: | D-mycarose 3-C-methyltransferase |
---|---|
ID: | Q194Q4_STRAA |
AC: | Q194Q4 |
Organism: | Streptomyces argillaceus |
Reign: | Bacteria |
TaxID: | 41951 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 41.150 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.610 | 1822.500 |
% Hydrophobic | % Polar |
---|---|
44.63 | 55.37 |
According to VolSite |
HET Code: | TYD |
---|---|
Formula: | C10H13N2O11P2 |
Molecular weight: | 399.165 g/mol |
DrugBank ID: | DB03103 |
Buried Surface Area: | 58.5 % |
Polar Surface area: | 220.27 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 11 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-17.1934 | 5.523 | 11.863 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5M | CB | SER- 84 | 4.2 | 0 | Hydrophobic |
C5' | CB | PRO- 328 | 3.92 | 0 | Hydrophobic |
O2B | N | ALA- 329 | 2.82 | 143.08 | H-Bond (Protein Donor) |
O2A | NZ | LYS- 330 | 3.56 | 0 | Ionic (Protein Cationic) |
O3' | OD2 | ASP- 350 | 2.88 | 172.08 | H-Bond (Ligand Donor) |
O2 | N | THR- 351 | 3.14 | 146.61 | H-Bond (Protein Donor) |
O3' | NZ | LYS- 355 | 2.84 | 173.72 | H-Bond (Protein Donor) |
O1A | OH | TYR- 388 | 2.89 | 166.87 | H-Bond (Protein Donor) |
C5' | CE2 | TYR- 388 | 3.74 | 0 | Hydrophobic |
C5M | CG | TYR- 388 | 3.64 | 0 | Hydrophobic |
C5M | CG1 | ILE- 392 | 4.34 | 0 | Hydrophobic |
O4 | NZ | LYS- 395 | 2.68 | 162.42 | H-Bond (Protein Donor) |
O2B | O | HOH- 617 | 2.81 | 168.7 | H-Bond (Protein Donor) |