Å
NMR
2000-03-16
Name: | Cell division control protein 42 homolog |
---|---|
ID: | CDC42_HUMAN |
AC: | P60953 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 0.000 |
---|---|
Number of residues: | 40 |
Including | |
Standard Amino Acids: | 39 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.447 | 563.625 |
% Hydrophobic | % Polar |
---|---|
49.70 | 50.30 |
According to VolSite |
HET Code: | GNP |
---|---|
Formula: | C10H13N6O13P3 |
Molecular weight: | 518.164 g/mol |
DrugBank ID: | DB02082 |
Buried Surface Area: | 60.09 % |
Polar Surface area: | 338.36 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 1 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
3.0125 | -9.02919 | 1.02603 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1B | N | ALA- 13 | 2.99 | 149.23 | H-Bond (Protein Donor) |
C5' | CB | ALA- 13 | 3.45 | 0 | Hydrophobic |
O2' | O | CYS- 18 | 3.08 | 131.12 | H-Bond (Ligand Donor) |
C3' | CB | CYS- 18 | 3.6 | 0 | Hydrophobic |
C2' | CB | SER- 22 | 4.28 | 0 | Hydrophobic |
C3' | CZ | PHE- 28 | 4.23 | 0 | Hydrophobic |
C1' | CB | ALA- 159 | 3.5 | 0 | Hydrophobic |
O2G | MG | MG- 186 | 2.39 | 0 | Metal Acceptor |
O2B | MG | MG- 186 | 2.37 | 0 | Metal Acceptor |