Å
NMR
2000-03-16
| Name: | Cell division control protein 42 homolog |
|---|---|
| ID: | CDC42_HUMAN |
| AC: | P60953 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 0.000 |
|---|---|
| Number of residues: | 40 |
| Including | |
| Standard Amino Acids: | 39 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.447 | 563.625 |
| % Hydrophobic | % Polar |
|---|---|
| 49.70 | 50.30 |
| According to VolSite | |

| HET Code: | GNP |
|---|---|
| Formula: | C10H13N6O13P3 |
| Molecular weight: | 518.164 g/mol |
| DrugBank ID: | DB02082 |
| Buried Surface Area: | 60.09 % |
| Polar Surface area: | 338.36 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 16 |
| H-Bond Donors: | 5 |
| Rings: | 3 |
| Aromatic rings: | 1 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 3.0125 | -9.02919 | 1.02603 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1B | N | ALA- 13 | 2.99 | 149.23 | H-Bond (Protein Donor) |
| C5' | CB | ALA- 13 | 3.45 | 0 | Hydrophobic |
| O2' | O | CYS- 18 | 3.08 | 131.12 | H-Bond (Ligand Donor) |
| C3' | CB | CYS- 18 | 3.6 | 0 | Hydrophobic |
| C2' | CB | SER- 22 | 4.28 | 0 | Hydrophobic |
| C3' | CZ | PHE- 28 | 4.23 | 0 | Hydrophobic |
| C1' | CB | ALA- 159 | 3.5 | 0 | Hydrophobic |
| O2G | MG | MG- 186 | 2.39 | 0 | Metal Acceptor |
| O2B | MG | MG- 186 | 2.37 | 0 | Metal Acceptor |