scPDB - 1wl4 entry

Protein Data Bank Entry:

PDB ID : 1wl4

Resolution :1.550 Å

Experimental Method : X-ray

Deposition Date : 2004-06-20

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Acetyl-CoA acetyltransferase, cytosolic
ID:	THIC_HUMAN
AC:	Q9BWD1
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	2.3.1.9

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	15.093
Number of residues:	44
Including
Standard Amino Acids:	40
Non Standard Amino Acids:	1
Water Molecules:	3
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
1.338	374.625

% Hydrophobic	% Polar
64.86	35.14
According to VolSite

Ligand :

HET Code:	COA
Formula:	C21H32N7O16P3S
Molecular weight:	763.502 g/mol
DrugBank ID:	DB01992
Buried Surface Area:	45.52 %
Polar Surface area:	426.11 Å2

Number of
H-Bond Acceptors:	21
H-Bond Donors:	6
Rings:	3
Aromatic rings:	2
Anionic atoms:	4
Cationic atoms:	0
Rule of Five Violation:	3
Rotatable Bonds:	18

Mass center Coordinates

X	Y	Z
12.8034	34.3196	11.7058

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
S1P	SG	CSO- 92	4.18	0	Hydrophobic	false
C6P	CD1	LEU- 151	4.08	0	Hydrophobic	false
C2P	CB	MET- 160	4.37	0	Hydrophobic	false
S1P	CG	MET- 160	3.75	0	Hydrophobic	false
O2B	NH1	ARG- 223	2.96	161.74	H-Bond (Protein Donor)	false
O2B	NH2	ARG- 223	3.36	137.85	H-Bond (Protein Donor)	false
DuAr	CZ	ARG- 223	3.84	168.16	Pi/Cation	false
N6A	OG	SER- 226	3.11	149.02	H-Bond (Ligand Donor)	false
C1B	CD1	LEU- 234	4.09	0	Hydrophobic	false
CDP	CE2	TYR- 237	4.31	0	Hydrophobic	false
CEP	CZ	TYR- 237	3.55	0	Hydrophobic	false
CDP	CZ	PHE- 238	4.23	0	Hydrophobic	false
CCP	CB	PRO- 248	4.46	0	Hydrophobic	false
CDP	CB	PRO- 248	4.1	0	Hydrophobic	false
C5B	CB	PRO- 248	3.81	0	Hydrophobic	false
N8P	O	SER- 252	2.83	146.82	H-Bond (Ligand Donor)	false
CAP	CD1	ILE- 254	3.93	0	Hydrophobic	false
C6P	CG1	ILE- 254	4.21	0	Hydrophobic	false
S1P	CE	MET- 293	3.56	0	Hydrophobic	false
C2P	CB	ALA- 323	3.81	0	Hydrophobic	false
C2P	CE1	PHE- 324	3.79	0	Hydrophobic	false
N4P	O	HOH- 3050	3.1	148.6	H-Bond (Ligand Donor)	false
N6A	O	HOH- 3053	3.01	136.44	H-Bond (Ligand Donor)	false