2.000 Å
X-ray
2009-12-28
| Name: | Glycogen phosphorylase, muscle form |
|---|---|
| ID: | PYGM_RABIT |
| AC: | P00489 |
| Organism: | Oryctolagus cuniculus |
| Reign: | Eukaryota |
| TaxID: | 9986 |
| EC Number: | 2.4.1.1 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 25.202 |
|---|---|
| Number of residues: | 43 |
| Including | |
| Standard Amino Acids: | 38 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 4 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.605 | 739.125 |
| % Hydrophobic | % Polar |
|---|---|
| 43.38 | 56.62 |
| According to VolSite | |

| HET Code: | DK5 |
|---|---|
| Formula: | C17H18FN3O5 |
| Molecular weight: | 363.340 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 71.1 % |
| Polar Surface area: | 111.46 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| 35.3845 | 24.0568 | 29.8678 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O10 | N | LEU- 136 | 2.93 | 155.35 | H-Bond (Protein Donor) |
| C6 | CD2 | LEU- 139 | 4.18 | 0 | Hydrophobic |
| C14 | CB | PHE- 286 | 4.28 | 0 | Hydrophobic |
| O6 | ND1 | HIS- 377 | 2.63 | 161.87 | H-Bond (Ligand Donor) |
| C13 | CB | ALA- 383 | 3.98 | 0 | Hydrophobic |
| O4 | ND2 | ASN- 484 | 3.38 | 124.3 | H-Bond (Protein Donor) |
| O6 | ND2 | ASN- 484 | 2.97 | 156.21 | H-Bond (Protein Donor) |
| F3 | CG | GLU- 672 | 3.71 | 0 | Hydrophobic |
| F3 | CB | ALA- 673 | 3.65 | 0 | Hydrophobic |
| F3 | CB | SER- 674 | 4.27 | 0 | Hydrophobic |
| C4 | CB | SER- 674 | 4.32 | 0 | Hydrophobic |
| O4 | N | GLY- 675 | 2.83 | 131.21 | H-Bond (Protein Donor) |