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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

2x90

1.980 Å

X-ray

2010-03-14

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Angiotensin-converting enzyme
ID:ACE_DROME
AC:Q10714
Organism:Drosophila melanogaster
Reign:Eukaryota
TaxID:7227
EC Number:3.4.15.1


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:21.451
Number of residues:27
Including
Standard Amino Acids: 25
Non Standard Amino Acids: 1
Water Molecules: 1
Cofactors:
Metals: ZN

Cavity properties

LigandabilityVolume (Å3)
0.480870.750

% Hydrophobic% Polar
32.5667.44
According to VolSite

Ligand :
2x90_1 Structure
HET Code: EAL
Formula: C18H23N2O5
Molecular weight: 347.386 g/mol
DrugBank ID: DB09477
Buried Surface Area:56.29 %
Polar Surface area: 117.18 Å2
Number of
H-Bond Acceptors: 5
H-Bond Donors: 1
Rings: 2
Aromatic rings: 1
Anionic atoms: 2
Cationic atoms: 1
Rule of Five Violation: 0
Rotatable Bonds: 8

Mass center Coordinates

XYZ
-13.32925.5206-23.6012


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
O4NE2GLN- 2653.34147.58H-Bond
(Protein Donor)
O5NE2GLN- 2653.24152.99H-Bond
(Protein Donor)
N1NE2HIS- 3373.38162.47H-Bond
(Ligand Donor)
N1OALA- 3383.2128.17H-Bond
(Ligand Donor)
C10CBALA- 3384.330Hydrophobic
C17CBSER- 3394.370Hydrophobic
C10CG2THR- 3644.470Hydrophobic
N1OE2GLU- 3683.60Ionic
(Ligand Cationic)
O4NZLYS- 4952.75160.05H-Bond
(Protein Donor)
O4NZLYS- 4952.750Ionic
(Protein Cationic)
O5NZLYS- 4953.860Ionic
(Protein Cationic)
O1NE2HIS- 4972.51140.32H-Bond
(Protein Donor)
C15CG1VAL- 50240Hydrophobic
C20CG2VAL- 5024.240Hydrophobic
C21CG1VAL- 5023.890Hydrophobic
C16CG2VAL- 5024.010Hydrophobic
O3OHTYR- 5072.56151.67H-Bond
(Protein Donor)
O2ZN ZN- 16182.40Metal Acceptor
O3ZN ZN- 161820Metal Acceptor