scPDB - 2cy2 entry

Protein Data Bank Entry:

PDB ID : 2cy2

Resolution :2.000 Å

Experimental Method : X-ray

Deposition Date : 2005-07-04

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Probable acetyltransferase
ID:	Q5SJ05_THET8
AC:	Q5SJ05
Organism:	Thermus thermophilus
Reign:	Bacteria
TaxID:	300852
EC Number:	/

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	39.831
Number of residues:	39
Including
Standard Amino Acids:	36
Non Standard Amino Acids:	0
Water Molecules:	3
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.699	475.875

% Hydrophobic	% Polar
56.74	43.26
According to VolSite

Ligand :

HET Code:	ACO
Formula:	C23H34N7O17P3S
Molecular weight:	805.539 g/mol
DrugBank ID:	-
Buried Surface Area:	65.8 %
Polar Surface area:	429.68 Å2

Number of
H-Bond Acceptors:	22
H-Bond Donors:	5
Rings:	3
Aromatic rings:	2
Anionic atoms:	4
Cationic atoms:	0
Rule of Five Violation:	2
Rotatable Bonds:	20

Mass center Coordinates

X	Y	Z
-0.996451	44.6001	63.712

Binding mode :

What is Poseview ?

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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C6P	CG2	THR- 21	3.77	0	Hydrophobic	false
C6P	CG2	THR- 25	4.04	0	Hydrophobic	false
CH3	CD2	LEU- 91	4.22	0	Hydrophobic	false
CEP	CG1	ILE- 94	3.95	0	Hydrophobic	false
CH3	CB	ILE- 94	4.04	0	Hydrophobic	false
N4P	O	ILE- 94	2.95	137.16	H-Bond (Ligand Donor)	false
C6P	CD2	TYR- 95	3.49	0	Hydrophobic	false
C2P	CZ	TYR- 95	4.13	0	Hydrophobic	false
CEP	CG2	VAL- 96	4.38	0	Hydrophobic	false
CAP	CB	VAL- 96	4.45	0	Hydrophobic	false
O9P	N	VAL- 96	2.92	157.35	H-Bond (Protein Donor)	false
CAP	CG	GLN- 101	3.8	0	Hydrophobic	false
O2B	NH2	ARG- 102	2.96	147.48	H-Bond (Protein Donor)	false
O4A	N	ARG- 102	3.01	169.78	H-Bond (Protein Donor)	false
DuAr	CZ	ARG- 102	3.95	152.88	Pi/Cation	false
O1A	N	GLY- 104	2.76	149.37	H-Bond (Protein Donor)	false
O5A	N	GLY- 106	2.76	155.93	H-Bond (Protein Donor)	false
C5B	CB	ARG- 107	3.72	0	Hydrophobic	false
O2A	N	ARG- 107	2.7	154.82	H-Bond (Protein Donor)	false
S1P	CG2	VAL- 127	4.4	0	Hydrophobic	false
CH3	CG2	VAL- 127	3.9	0	Hydrophobic	false
S1P	CB	VAL- 129	3.98	0	Hydrophobic	false
O5P	ND2	ASN- 133	2.73	167.46	H-Bond (Protein Donor)	false
C5B	CE1	PHE- 139	4.02	0	Hydrophobic	false
CBP	CG	PHE- 139	4.31	0	Hydrophobic	false
CCP	CD1	PHE- 139	3.4	0	Hydrophobic	false
CDP	CB	PHE- 139	3.84	0	Hydrophobic	false
CEP	CE2	PHE- 139	4.46	0	Hydrophobic	false
S1P	CE2	TYR- 140	3.86	0	Hydrophobic	false
CH3	CZ	TYR- 140	4.27	0	Hydrophobic	false
C1B	CB	HIS- 142	4.07	0	Hydrophobic	false
O8A	NE2	HIS- 142	2.69	154.19	H-Bond (Protein Donor)	false
C4B	CD1	LEU- 143	4.15	0	Hydrophobic	false
O5A	O	HOH- 204	2.54	146.45	H-Bond (Protein Donor)	false