sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2cy2 | ACO | Probable acetyltransferase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2cy2 | ACO | Probable acetyltransferase | / | 1.420 | |
| 1i12 | ACO | Glucosamine 6-phosphate N-acetyltransferase | / | 0.963 | |
| 4u9v | ACO | N-alpha-acetyltransferase 40 | 2.3.1 | 0.893 | |
| 1tiq | COA | Spermidine/spermine N(1)-acetyltransferase | / | 0.887 | |
| 2bei | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.876 | |
| 3vwd | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.862 | |
| 4if5 | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.857 | |
| 3k9u | ACO | Spermidine N(1)-acetyltransferase | / | 0.848 | |
| 2fxf | ACO | Diamine acetyltransferase 1 | / | 0.834 | |
| 3f0a | ACO | Spermidine N(1)-acetyltransferase | / | 0.834 | |
| 4b5o | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.833 | |
| 1b87 | ACO | Aac(6')-Ii protein | / | 0.827 | |
| 4gs4 | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.822 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.822 | |
| 4u9y | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.820 | |
| 5kgj | ACO | Predicted acetyltransferase | / | 0.819 | |
| 1j4j | ACO | Acetyltransferase | 2.3.1 | 0.808 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.808 | |
| 1ghe | ACO | Acetyltransferase | 2.3.1 | 0.807 | |
| 3exn | ACO | Probable acetyltransferase | / | 0.806 | |
| 4jwp | ACO | GCN5-related N-acetyltransferase | / | 0.800 | |
| 4b5p | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.795 | |
| 2vxk | COA | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.792 | |
| 5kf2 | ACO | Predicted acetyltransferase | / | 0.792 | |
| 2b3v | ACO | Diamine acetyltransferase 1 | / | 0.787 | |
| 4mxe | ACO | N-acetyltransferase ESCO1 | 2.3.1 | 0.783 | |
| 1ib1 | COT | Serotonin N-acetyltransferase | / | 0.780 | |
| 1bob | ACO | Histone acetyltransferase type B catalytic subunit | / | 0.779 | |
| 4zm6 | ACO | N-acetyl-beta-D glucosaminidase | / | 0.775 | |
| 2a4n | COA | Aac(6')-Ii protein | / | 0.773 | |
| 2vez | ACO | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.772 | |
| 2q4v | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.770 | |
| 3vwe | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.768 | |
| 3pgp | ACO | Uncharacterized protein | / | 0.763 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.763 | |
| 1n71 | COA | Aac(6')-Ii protein | / | 0.762 | |
| 1qsm | ACO | Histone acetyltransferase HPA2 | / | 0.760 | |
| 4u9z | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.752 | |
| 2giv | ACO | Histone acetyltransferase KAT8 | / | 0.751 | |
| 2bue | COA | AAC(6')-Ib | / | 0.742 | |
| 2y0m | ACO | Histone acetyltransferase KAT8 | / | 0.742 | |
| 3zj0 | ACO | Putative acetyltransferase OgpAT | / | 0.742 | |
| 4hkf | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.742 | |
| 3bj7 | COA | Diamine acetyltransferase 1 | / | 0.741 | |
| 1s3z | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.739 | |
| 1kuv | CA5 | Serotonin N-acetyltransferase | / | 0.738 | |
| 5kf2 | COA | Predicted acetyltransferase | / | 0.738 | |
| 1wwz | ACO | Uncharacterized protein | / | 0.737 | |
| 2prb | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 0.734 | |
| 2qir | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 0.734 | |
| 4ri1 | ACO | UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase | 2.3.1.202 | 0.731 | |
| 1kuy | COT | Serotonin N-acetyltransferase | / | 0.730 | |
| 1p0h | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.727 | |
| 2fiw | ACO | GCN5-related N-acetyltransferase:Aminotransferase, class-II | / | 0.727 | |
| 2r8v | ACO | Amino-acid acetyltransferase | / | 0.727 | |
| 4lx9 | ACO | N-alpha-acetyltransferase | 2.3.1 | 0.727 | |
| 3to6 | LYS_CMC | Histone acetyltransferase ESA1 | / | 0.726 | |
| 4cs0 | ACO | PanD regulatory factor | / | 0.725 | |
| 2rc4 | ACO | Histone acetyltransferase KAT6A | / | 0.724 | |
| 2ozu | ACO | Histone acetyltransferase KAT6A | / | 0.721 | |
| 1cjw | COT | Serotonin N-acetyltransferase | / | 0.718 | |
| 5kf1 | ACO | Predicted acetyltransferase | / | 0.718 | |
| 4ua3 | COA | N-alpha-acetyltransferase 40 | 2.3.1 | 0.714 | |
| 3mgd | ACO | Predicted acetyltransferase | / | 0.709 | |
| 4cry | ACO | PanD regulatory factor | / | 0.708 | |
| 2c27 | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.705 | |
| 5kgh | ACO | Predicted acetyltransferase | / | 0.705 | |
| 1fy7 | COA | Histone acetyltransferase ESA1 | / | 0.704 | |
| 1mja | COA | Histone acetyltransferase ESA1 | / | 0.702 | |
| 3te4 | ACO | Dopamine N-acetyltransferase | / | 0.702 | |
| 4ag7 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.700 | |
| 2bsw | CAO | Probable acetyltransferase | / | 0.696 | |
| 4psw | COA | Histone acetyltransferase type B catalytic subunit | / | 0.696 | |
| 1m4i | COA | Aminoglycoside 2'-N-acetyltransferase | 2.3.1 | 0.695 | |
| 1s5k | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.695 | |
| 2cnt | COA | Ribosomal-protein-alanine acetyltransferase | / | 0.695 | |
| 5h84 | 1VU | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.693 | |
| 1mjb | ACO | Histone acetyltransferase ESA1 | / | 0.692 | |
| 2jdc | CAO | Probable acetyltransferase | / | 0.691 | |
| 4kub | COA | Uncharacterized protein | / | 0.691 | |
| 5kf8 | COA | Predicted acetyltransferase | / | 0.691 | |
| 2jdd | ACO | Probable acetyltransferase | / | 0.690 | |
| 4h6z | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.690 | |
| 3r95 | ACO | MccE protein | / | 0.688 | |
| 4r87 | COA | Spermidine N(1)-acetyltransferase | / | 0.688 | |
| 2vqy | ACO | AAC(6')-Ib | / | 0.685 | |
| 2psw | COA | N-alpha-acetyltransferase 50 | / | 0.684 | |
| 4ava | ACO | Acetyltransferase Pat | 2.3.1 | 0.683 | |
| 3f8k | COA | Uncharacterized protein | / | 0.682 | |
| 1pu9 | COA | HAT A1 | / | 0.680 | |
| 1s7n | COA | Acetyl transferase | / | 0.680 | |
| 1mj9 | COA | Histone acetyltransferase ESA1 | / | 0.679 | |
| 2ou2 | ACO | Histone acetyltransferase KAT5 | / | 0.679 | |
| 2zpa | ACO | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.679 | |
| 4qvt | ACO | Acetyltransferase YpeA | 2.3.1 | 0.671 | |
| 1m1d | LYX | HAT A1 | / | 0.669 | |
| 4r3k | COA | N-alpha-acetyltransferase | 2.3.1 | 0.667 | |
| 1bo4 | COA | Aminoglycoside-(3)-N-acetyltransferase | / | 0.666 | |
| 2o28 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.666 | |
| 3r96 | ACO | MccE protein | / | 0.666 | |
| 1l0c | COT | Serotonin N-acetyltransferase | / | 0.661 | |
| 4kvx | ACO | N-terminal acetyltransferase A complex catalytic subunit ard1 | 2.3.1.88 | 0.661 | |
| 4h6u | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.659 | |
| 4xpd | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 0.658 | |
| 1pua | COA | HAT A1 | / | 0.657 | |
| 5kf1 | COA | Predicted acetyltransferase | / | 0.657 | |
| 4crz | ACO | PanD regulatory factor | / | 0.654 | |
| 1z4r | ACO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.652 | |
| 3d2m | COA | Amino-acid acetyltransferase | / | 0.651 | |
| 4jxr | ACO | Acetyltransferase | / | 0.651 | |
| 1yre | COA | Uncharacterized protein | / | 0.650 | |
| 4xnh | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 0.650 |