Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1beuIPLTryptophan synthase alpha chain

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1beuIPLTryptophan synthase alpha chain/1.000
2rh9IGPTryptophan synthase alpha chain/0.695
2rhgIGPTryptophan synthase alpha chain/0.633
1kfbIGPTryptophan synthase alpha chain/0.592
1qoqIGPTryptophan synthase alpha chain/0.592
1a5bIGPTryptophan synthase alpha chain/0.569
1kfcIPLTryptophan synthase alpha chain/0.569
1k7fIAVTryptophan synthase alpha chain/0.504
1kkq471Peroxisome proliferator-activated receptor alpha/0.493
1xe65FPPlasmepsin-23.4.23.390.490
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.484
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.482
1k8y13PTryptophan synthase alpha chain/0.480
4du82P0Mevalonate diphosphate decarboxylase/0.480
1tj0FADBifunctional protein PutA1.5.5.20.479
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.479
4g7gVFVLanosterol 14-alpha-demethylase/0.479
4uymVOR14-alpha sterol demethylase Cyp51B/0.479
3ixp834Ecdysone receptor/0.478
4m83ERYOleandomycin glycosyltransferase2.4.10.477
1bvrNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.476
1xe55FEPlasmepsin-23.4.23.390.475
2g1s4IGRenin3.4.23.150.475
3gw9VNILanosterol 14-alpha-demethylase/0.475
4q73FADBifunctional protein PutA/0.475
4eywL0RCarnitine O-palmitoyltransferase 2, mitochondrial2.3.1.210.474
3b6zCO7Enoyl reductase LovC10.473
1hdcCBO3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.471
1n77ATPGlutamate--tRNA ligase6.1.1.170.471
3gwfNAPCyclohexanone monooxygenase/0.471
1x1aSAMC-20 methyltransferase/0.469
4g3jVNTLanosterol 14-alpha-demethylase/0.469
4ipw1G7Mycocyclosin synthase1.14.21.90.469
2znnS44Peroxisome proliferator-activated receptor alpha/0.468
1rneC60Renin3.4.23.150.467
2cy0NAPShikimate dehydrogenase (NADP(+))/0.467
2dftADPShikimate kinase2.7.1.710.467
2ed4NAD4-hydroxyphenylacetate 3-monooxygenase reductase component1.5.1.360.467
4h8aNAIUreidoglycolate dehydrogenase (NAD(+))1.1.1.3500.467
2iviACWIsopenicillin N synthase1.21.3.10.466
4r81FMNPredicted NADH dehydrogenase/0.466
5b1yNDP3-oxoacyl-[acyl-carrier-protein] reductase/0.466
5d3qGDPDynamin-13.6.5.50.466
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.465
2ft9CHDFatty acid-binding protein 2, liver/0.465
4m9aFDAAcyl-CoA dehydrogenase/0.465
2gv8NDPThiol-specific monooxygenase1.14.130.464
2vn0TDZCytochrome P450 2C8/0.464
4q72FADBifunctional protein PutA/0.464
2il2LIXRenin3.4.23.150.463
2q85973UDP-N-acetylenolpyruvoylglucosamine reductase1.3.1.980.463
3a1cACPProbable copper-exporting P-type ATPase A3.6.3.540.463
3hl0NADMaleylacetate reductase/0.463
3r9iADPSeptum site-determining protein MinD/0.463
5dw60T1Succinyl-CoA:acetate CoA-transferase/0.463
1x1bSAHC-20 methyltransferase/0.462
3p62FMNPentaerythritol tetranitrate reductase/0.462
4iqlFMNEnoyl-(Acyl-carrier-protein) reductase II/0.462
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.462
1bk0ACVIsopenicillin N synthase1.21.3.10.461
1f8fNADBenzyl alcohol dehydrogenase/0.461
2g226IGRenin3.4.23.150.461
2bu9HFVIsopenicillin N synthase1.21.3.10.460
2ohjFMNType A flavoprotein FprA10.460
3isjA8DPantothenate synthetase6.3.2.10.460
3oqkS52Renin3.4.23.150.460
3tjzGNPADP-ribosylation factor 1/0.460
4ejmNAPPutative zinc-binding dehydrogenase/0.460
4frkDWDBeta-secretase 13.4.23.460.460
4q71FADBifunctional protein PutA/0.460
2gtbAZPOrf1ab polyprotein/0.459
3gfbNADL-threonine 3-dehydrogenase/0.459
3vydVYDRenin3.4.23.150.459
4a6bQG8Gag-Pol polyprotein3.4.23.160.459
4uwmFMN3,6-diketocamphane 1,6 monooxygenase1.14.130.459
1tqf32PBeta-secretase 13.4.23.460.458
2q1sNAIPutative nucleotide sugar epimerase/ dehydratase/0.458
2vbdV10Isopenicillin N synthase1.21.3.10.458
3d91REMRenin3.4.23.150.458
4jicFMNGTN Reductase/0.458
4z26FADPutative GMC-type oxidoreductase R13510.458
4z61ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.458
1bil0IURenin3.4.23.150.457
1xddAAYIntegrin alpha-L/0.457
1yb5NAPQuinone oxidoreductase1.6.5.50.457
2dsiSAHDiphthine synthase/0.457
2xc3RT8Steroid C26-monooxygenase1.14.13.1410.457
2xvfFADPutative flavin-containing monooxygenase/0.457
3em0CHDFatty acid-binding protein 6, ileal (gastrotropin)/0.457
4nbwNADShort-chain dehydrogenase/reductase SDR/0.457
1me6IVSPlasmepsin-23.4.23.390.456
3v2uATPProtein GAL3/0.456
4z4pSAHHistone-lysine N-methyltransferase 2D2.1.1.430.456
5kwvANPPantothenate synthetase/0.456
2qw034Z4-chlorobenzoyl CoA ligase/0.455
3gqvNAPEnoyl reductase LovC10.455
3iocA5DPantothenate synthetase6.3.2.10.455
3otbDGTProbable tRNA(His) guanylyltransferase2.7.7.790.455
3u9eCOALmo1369 protein/0.455
3zkyWT4Isopenicillin N synthase1.21.3.10.455
4bfzZVZPantothenate kinase2.7.1.330.455
4yp6NAPNicotinamide-nucleotide adenylyltransferase2.7.7.10.455
1culFOKAdenylate cyclase type 2/0.454
1culFOKAdenylate cyclase type 5/0.454
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.454
1orkATCTetracycline repressor protein class D/0.454
1qy5NECEndoplasmin/0.454
1w6hTITPlasmepsin-23.4.23.390.454
2oapANPType II secretion system protein (GspE-2)/0.454
3c212BADNA integrity scanning protein DisA/0.454
3g70A5TRenin3.4.23.150.454
3zoiM2WIsopenicillin N synthase1.21.3.10.454
4v2gITCTetracycline repressor protein class D/0.454
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.454
2fw3BUICarnitine O-palmitoyltransferase 2, mitochondrial2.3.1.210.453
2g1r3IGRenin3.4.23.150.453
2g1y5IGRenin3.4.23.150.453
2ghlLIBMitogen-activated protein kinase 14/0.453
2i4pDRHPeroxisome proliferator-activated receptor gamma/0.453
2qimZEAClass 10 plant pathogenesis-related protein/0.453
3vqsJT1Genome polyprotein/0.453
4a802ANMajor pollen allergen Bet v 1-A/0.453
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.453
1uzwCDHIsopenicillin N synthase1.21.3.10.452
2c27ACOMycothiol acetyltransferase2.3.1.1890.452
2i4qUA4Renin3.4.23.150.452
3b70NAPEnoyl reductase LovC10.452
4b4vL34Bifunctional protein FolD/0.452
4dbzNDPPutative ketoacyl reductase1.3.10.452
4nieNBHNuclear receptor ROR-gamma/0.452
4o1mNADEnoyl-acyl carrier reductase/0.452
4x28FDAAcyl-CoA dehydrogenase FadE26/0.452
4x28FDAAcyl-CoA dehydrogenase FadE27/0.452
5ftfADPTPR domain protein/0.452
1h63FMNPentaerythritol tetranitrate reductase/0.451
1k7l544Peroxisome proliferator-activated receptor alpha/0.451
1kh3ANPArgininosuccinate synthase/0.451
2e16SAHDiphthine synthase/0.451
2jb4A14Isopenicillin N synthase1.21.3.10.451
3n0bFADFlavin-dependent thymidylate synthase2.1.1.1480.451
3ohh3HHBeta-secretase 13.4.23.460.451
4zqcF6FTryptophan synthase alpha chain/0.451
5a9sNAPPutative dehydrogenase/0.451
1h50FMNPentaerythritol tetranitrate reductase/0.450
1h73ANPHomoserine kinase2.7.1.390.450
1jioDEB6-deoxyerythronolide B hydroxylase/0.450
1rfuADPPyridoxal kinase2.7.1.350.450
2aqhNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.450
2q46NAPUncharacterized protein At5g02240/0.450
2vprTDCTetracycline repressor protein class H/0.450
4dc0NDPPutative ketoacyl reductase1.3.10.450
4g9kFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.450
1bwsNDPGDP-L-fucose synthase/0.449
1gzuNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 12.7.7.10.449
1oc1ASVIsopenicillin N synthase1.21.3.10.449
1qlhNADAlcohol dehydrogenase E chain1.1.1.10.449
2uxoTACHTH-type transcriptional regulator TtgR/0.449
4a862ANMajor pollen allergen Bet v 1-A/0.449
4nd2A3DLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.449
4q0kGA3Phytohormone-binding protein/0.449
1dxqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.448
1geeNADGlucose 1-dehydrogenase1.1.1.470.448
1nvtNAPShikimate dehydrogenase (NADP(+))/0.448
2g1o2IGRenin3.4.23.150.448
2vigFADShort-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.10.448
3cxw7CPSerine/threonine-protein kinase pim-12.7.11.10.448
3f03FMNPentaerythritol tetranitrate reductase/0.448
3te5NAI5'-AMP-activated protein kinase subunit gamma/0.448
4dreNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.448
4gl4NAIAlcohol dehydrogenase class-3/0.448
4h9tHL4Phosphotriesterase/0.448
4xguADPPutative pachytene checkpoint protein 2/0.448
4yj2GTPTubulin alpha-1B chain/0.448
1cl0FADThioredoxin reductase1.8.1.90.447
1nuuNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.447
1ri1GTGmRNA cap guanine-N7 methyltransferase2.1.1.560.447
1u3dFADCryptochrome-1/0.447
2e17SAHDiphthine synthase/0.447
2e8rSAHDiphthine synthase/0.447
2g2zCOZMalonyl CoA-acyl carrier protein transacylase2.3.1.390.447
2yyiFAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component1.14.14.90.447
4a8v2ANMajor pollen allergen Bet v 1-J/0.447
4bfxZVXPantothenate kinase2.7.1.330.447
4ke11R6Beta-secretase 13.4.23.460.447
4zirANPEnergy-coupling factor transporter ATP-binding protein EcfA23.6.30.447
4zirANPEnergy-coupling factor transporter ATP-binding protein EcfA1/0.447
2dsgSAHDiphthine synthase/0.446
2xvhFADPutative flavin-containing monooxygenase/0.446
3ctyFADProbable thioredoxin reductase/0.446
3h3sH15Collagen type IV alpha-3-binding protein/0.446
3hyoADPPyridoxal kinase/0.446
3mk6ACOPantothenate kinase 32.7.1.330.446
3zcsCAWGlycogen phosphorylase, muscle form2.4.1.10.446
1icqFMN12-oxophytodienoate reductase 11.3.1.420.445
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.445
2i4jDRJPeroxisome proliferator-activated receptor gamma/0.445
2lfoGCHFatty acid-binding protein, liver/0.445
2pciSAHDiphthine synthase/0.445
2zbaZBATrichothecene 3-O-acetyltransferase/0.445
3gkaFMNN-ethylmaleimide reductase/0.445
3ivgFG5Pantothenate synthetase6.3.2.10.445
4c3f7KWTyrosine-protein kinase Lck2.7.10.20.445
4j491J1Uncharacterized protein/0.445
4loi1YCStimulator of interferon genes protein/0.445
1gg5FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.444
1m8kNADNicotinamide-nucleotide adenylyltransferase2.7.7.10.444
1txtCAAHMG-CoA synthase/0.444
2cibCM6Lanosterol 14-alpha demethylase1.14.13.700.444
2ek7SAHDiphthine synthase/0.444
2hsdNAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.444
3qt62P0Mevalonate diphosphate decarboxylase/0.444
4a87NARMajor pollen allergen Bet v 1-A/0.444
4bfvZVVPantothenate kinase2.7.1.330.444
4briUNPEctonucleoside triphosphate diphosphohydrolase I/0.444
4eagATP5'-AMP-activated protein kinase subunit gamma-1/0.444
4opgFDAConserved Archaeal protein/0.444
1m13HYFNuclear receptor subfamily 1 group I member 2/0.443
1obnASVIsopenicillin N synthase1.21.3.10.443
1x1cSAHC-20 methyltransferase/0.443
1yonA2R2-dehydropantoate 2-reductase1.1.1.1690.443
2g21L1BRenin3.4.23.150.443
3ig6438Urokinase-type plasminogen activator3.4.21.730.443
3s1dZIRCytokinin dehydrogenase 11.5.99.120.443
4ambDUDPutative glycosyl transferase/0.443
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.443
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.443
4egbNADdTDP-glucose 4,6-dehydratase/0.443
4k6fNAPPutative Acetoacetyl-CoA reductase/0.443
4nakPBQ2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic2.7.7.600.443
1a5sFIPTryptophan synthase alpha chain/0.442
2cv2GSUGlutamate--tRNA ligase6.1.1.170.442
2fxv5GPXanthine phosphoribosyltransferase2.4.2.220.442
2g1n1IGRenin3.4.23.150.442
2he5NDPAldo-keto reductase family 1 member C211.1.10.442
2hunNAD336aa long hypothetical dTDP-glucose 4,6-dehydratase/0.442
2pobGW4Peroxisome proliferator-activated receptor gamma/0.442
3hdhNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.442
3hekBD0Heat shock protein HSP 90-alpha/0.442
3iaaTYDCalG2/0.442
4azmT4BFatty acid-binding protein, epidermal/0.442
4blrUTPNTPase P4/0.442
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.442
4fxy0W2Neurolysin, mitochondrial3.4.24.160.442
4imoPWZProstaglandin-H2 D-isomerase5.3.99.20.442
1e3eNAIAlcohol dehydrogenase 41.1.1.10.441
1hb1OCVIsopenicillin N synthase1.21.3.10.441
1qyxASDEstradiol 17-beta-dehydrogenase 11.1.1.620.441
1u2gAPRNAD(P) transhydrogenase subunit alpha part 11.6.1.20.441
1y7lASN_LEU_ASN_ILECysteine synthase2.5.1.470.441
2abbFMNPentaerythritol tetranitrate reductase/0.441
2ahrNAPPyrroline-5-carboxylate reductase/0.441
2c12FADNitroalkane oxidase1.7.3.10.441
2c1bCQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.441
2dvlFADAcyl-CoA dehydrogenase/0.441
2e9dB76Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.441
2f7x4EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.441
2g247IGRenin3.4.23.150.441
2iko7IGRenin3.4.23.150.441
3ii43IIDihydrolipoyl dehydrogenase1.8.1.40.441
3r9uFADThioredoxin reductase/0.441
4bb3KKAIsopenicillin N synthase1.21.3.10.441
4bkqNAIEnoyl-[acyl-carrier-protein] reductase [NADH]/0.441
4f7iNAD3-isopropylmalate dehydrogenase1.1.1.850.441
4irnFADAnaB/0.441
4m5pFMNNADPH dehydrogenase/0.441
1bim0QBRenin3.4.23.150.440
1c6yMK1Protease/0.440
1kbo340NAD(P)H dehydrogenase [quinone] 11.6.5.20.440
1l2tATPUncharacterized ABC transporter ATP-binding protein MJ0796/0.440
1r2jFADFkbI/0.440
1udaUFGUDP-glucose 4-epimerase5.1.3.20.440
2egbSAHDiphthine synthase/0.440
2gd2CAAProbable alpha-methylacyl-CoA racemase Mcr (2-methylacyl-CoA racemase) (2-arylpropionyl-CoA epimerase )/0.440
2ikuLIYRenin3.4.23.150.440
2iyfERYOleandomycin glycosyltransferase2.4.10.440
2qs3UBEGlutamate receptor ionotropic, kainate 1/0.440
2vcmM11Isopenicillin N synthase1.21.3.10.440
2y60M8FIsopenicillin N synthase1.21.3.10.440
2z1mNDPGDP-mannose 4,6-dehydratase/0.440
3dgaNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.440
3elbC5PEthanolamine-phosphate cytidylyltransferase2.7.7.140.440
3g5sFADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO/0.440
3mpiFADGlutaryl-CoA dehydrogenase1.3.99.320.440
4an4DUDPutative glycosyl transferase/0.440
4dquNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.440
4rnuFMNNADPH dehydrogenase 11.6.99.10.440
4rvgTYDD-mycarose 3-C-methyltransferase/0.440