1.800 Å
X-ray
2012-08-13
| Name: | Alcohol dehydrogenase class-3 |
|---|---|
| ID: | ADHX_ARATH |
| AC: | Q96533 |
| Organism: | Arabidopsis thaliana |
| Reign: | Eukaryota |
| TaxID: | 3702 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 98 % |
| B | 2 % |
| B-Factor: | 34.156 |
|---|---|
| Number of residues: | 44 |
| Including | |
| Standard Amino Acids: | 42 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | ZN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.471 | 2048.625 |
| % Hydrophobic | % Polar |
|---|---|
| 47.78 | 52.22 |
| According to VolSite | |

| HET Code: | NAI |
|---|---|
| Formula: | C21H27N7O14P2 |
| Molecular weight: | 663.425 g/mol |
| DrugBank ID: | DB00157 |
| Buried Surface Area: | 58.41 % |
| Polar Surface area: | 342.9 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 19 |
| H-Bond Donors: | 6 |
| Rings: | 5 |
| Aromatic rings: | 2 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 11 |
| X | Y | Z |
|---|---|---|
| 65.1295 | 19.0107 | 43.1592 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C4N | CG2 | THR- 181 | 3.64 | 0 | Hydrophobic |
| O2N | N | VAL- 206 | 3.07 | 159.1 | H-Bond (Protein Donor) |
| C5D | CG2 | VAL- 206 | 3.87 | 0 | Hydrophobic |
| O3B | OD2 | ASP- 226 | 2.68 | 155.08 | H-Bond (Ligand Donor) |
| O2B | OD2 | ASP- 226 | 3.26 | 157.29 | H-Bond (Ligand Donor) |
| N3A | N | ILE- 227 | 3.45 | 140.73 | H-Bond (Protein Donor) |
| C1B | CG1 | ILE- 272 | 4.29 | 0 | Hydrophobic |
| N7N | O | VAL- 295 | 2.87 | 167.47 | H-Bond (Ligand Donor) |
| O3D | N | VAL- 297 | 2.95 | 167.96 | H-Bond (Protein Donor) |
| C1D | CG2 | VAL- 297 | 4.42 | 0 | Hydrophobic |
| N7N | O | THR- 320 | 2.97 | 157.38 | H-Bond (Ligand Donor) |
| O7N | N | PHE- 322 | 2.86 | 173.37 | H-Bond (Protein Donor) |
| O2N | O | HOH- 516 | 2.57 | 179.99 | H-Bond (Protein Donor) |