2.500 Å
X-ray
2007-01-24
| Name: | Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) |
|---|---|
| ID: | UPPS_ECOLI |
| AC: | P60472 |
| Organism: | Escherichia coli |
| Reign: | Bacteria |
| TaxID: | 83333 |
| EC Number: | 2.5.1.31 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 58.793 |
|---|---|
| Number of residues: | 23 |
| Including | |
| Standard Amino Acids: | 23 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.290 | 1458.000 |
| % Hydrophobic | % Polar |
|---|---|
| 50.46 | 49.54 |
| According to VolSite | |

| HET Code: | B76 |
|---|---|
| Formula: | C20H16O8P2 |
| Molecular weight: | 446.284 g/mol |
| DrugBank ID: | DB07426 |
| Buried Surface Area: | 37.82 % |
| Polar Surface area: | 175.46 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 8 |
| H-Bond Donors: | 1 |
| Rings: | 3 |
| Aromatic rings: | 3 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 7 |
| X | Y | Z |
|---|---|---|
| 41.7364 | 40.9915 | 57.1972 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CAK | CE | MET- 25 | 4.45 | 0 | Hydrophobic |
| CAU | CB | ASN- 28 | 3.84 | 0 | Hydrophobic |
| OAA | NE2 | HIS- 43 | 3.4 | 153.16 | H-Bond (Protein Donor) |
| CAT | CB | HIS- 43 | 4.2 | 0 | Hydrophobic |
| CBA | CB | HIS- 43 | 4.29 | 0 | Hydrophobic |
| CAW | CB | ALA- 69 | 3.96 | 0 | Hydrophobic |
| CAH | CD2 | LEU- 85 | 3.79 | 0 | Hydrophobic |
| CAI | CD1 | LEU- 88 | 3.79 | 0 | Hydrophobic |