sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4k81 | GTP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4k81 | GTP | GTPase HRas | / | 1.290 | |
| 3oiw | GNP | GTPase HRas | / | 1.136 | |
| 4g0n | GNP | GTPase HRas | / | 1.128 | |
| 4dlz | GNP | GTPase HRas | / | 1.122 | |
| 3oiv | GNP | GTPase HRas | / | 1.121 | |
| 4dlx | GNP | GTPase HRas | / | 1.121 | |
| 4l9w | GNP | GTPase HRas | / | 1.121 | |
| 3rs0 | GNP | GTPase HRas | / | 1.118 | |
| 3rs7 | GNP | GTPase HRas | / | 1.117 | |
| 3rsl | GNP | GTPase HRas | / | 1.117 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.111 | |
| 3k8y | GNP | GTPase HRas | / | 1.104 | |
| 2rgc | GNP | GTPase HRas | / | 1.103 | |
| 3rs4 | GNP | GTPase HRas | / | 1.103 | |
| 3lbn | GNP | GTPase HRas | / | 1.101 | |
| 4dlv | GNP | GTPase HRas | / | 1.100 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.099 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.092 | |
| 2c5l | GTP | GTPase HRas | / | 1.091 | |
| 3i3s | GNP | GTPase HRas | / | 1.089 | |
| 3rs5 | GNP | GTPase HRas | / | 1.089 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.078 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.077 | |
| 4nyj | GNP | GTPase HRas | / | 1.077 | |
| 3l8y | GNP | GTPase HRas | / | 1.074 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.073 | |
| 3lbi | GNP | GTPase HRas | / | 1.073 | |
| 2rge | GNP | GTPase HRas | / | 1.071 | |
| 3v4f | GNP | GTPase HRas | / | 1.069 | |
| 4dlt | GNP | GTPase HRas | / | 1.069 | |
| 4dlw | GNP | GTPase HRas | / | 1.067 | |
| 3ddc | GNP | GTPase HRas | / | 1.066 | |
| 3oiu | GNP | GTPase HRas | / | 1.066 | |
| 5b2z | GNP | GTPase HRas | / | 1.066 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.065 | |
| 4dsn | GCP | GTPase KRas | / | 1.058 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.048 | |
| 2rgb | GNP | GTPase HRas | / | 1.047 | |
| 3k9l | GNP | GTPase HRas | / | 1.046 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.046 | |
| 3lbh | GNP | GTPase HRas | / | 1.045 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 1.040 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.039 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.036 | |
| 4nyi | GNP | GTPase HRas | / | 1.031 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.025 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 1.025 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.018 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.017 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.017 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.016 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 1.014 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.010 | |
| 2ce2 | GDP | GTPase HRas | / | 1.009 | |
| 3tgp | GNP | GTPase HRas | / | 1.009 | |
| 4dso | GSP | GTPase KRas | / | 1.009 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.009 | |
| 4dls | GNP | GTPase HRas | / | 1.007 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 1.005 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 1.003 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 1.002 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.000 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.000 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.000 | |
| 4dvg | GSP | Rho family GTPase | / | 0.998 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.994 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.994 | |
| 4xvq | GNP | GTPase HRas | / | 0.994 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 0.993 | |
| 3kud | GDP | GTPase HRas | / | 0.993 | |
| 4dsu | GDP | GTPase KRas | / | 0.990 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.989 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.985 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.983 | |
| 4ql3 | GDP | GTPase KRas | / | 0.982 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.981 | |
| 4epx | GDP | GTPase KRas | / | 0.981 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 0.980 | |
| 4wa7 | GDP | GTPase KRas | / | 0.976 | |
| 4mit | GTP | Rho-related protein racC | / | 0.975 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.972 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.971 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.969 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.969 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.967 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.967 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.966 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.965 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.965 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.960 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.957 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.957 | |
| 4q03 | GDP | GTPase KRas | / | 0.956 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.955 | |
| 4tq9 | GDP | GTPase KRas | / | 0.955 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.954 | |
| 4l9s | GDP | GTPase HRas | / | 0.954 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.952 | |
| 4q02 | GDP | GTPase KRas | / | 0.951 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.949 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.943 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.943 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.940 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.936 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.935 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.935 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.934 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.934 | |
| 4xvr | GNP | GTPase HRas | / | 0.933 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.931 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.930 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.930 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.928 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.926 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.924 | |
| 2rgg | GNP | GTPase HRas | / | 0.922 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.922 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.920 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.919 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.918 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.918 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.917 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.916 | |
| 4ldj | GDP | GTPase KRas | / | 0.916 | |
| 2cl6 | CAG | GTPase HRas | / | 0.914 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.913 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.911 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.908 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.907 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.905 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.904 | |
| 3r9x | GNP | GTPase Era | / | 0.902 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.900 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.900 | |
| 4obe | GDP | GTPase KRas | / | 0.900 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.899 | |
| 4epw | GDP | GTPase KRas | / | 0.899 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.896 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.896 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.896 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.893 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.892 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.892 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.892 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.891 | |
| 4lrw | GDP | GTPase KRas | / | 0.891 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.888 | |
| 4lv6 | GDP | GTPase KRas | / | 0.883 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.881 | |
| 3ref | GDP | Rho family GTPase | / | 0.880 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.879 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.878 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.877 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.870 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.870 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.869 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.865 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.864 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.860 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.860 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.855 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.855 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.852 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.848 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.847 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.846 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.845 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.844 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.841 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.838 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.838 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.838 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.837 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.833 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.833 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.833 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.825 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.823 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.822 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.822 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.819 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.819 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.812 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.809 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.806 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.805 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.805 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.805 | |
| 5bn3 | ADP | NEQ263 | / | 0.805 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.801 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.801 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.801 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.800 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.797 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.796 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.795 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.793 | |
| 3ftq | GNP | Septin-2 | / | 0.793 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.792 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.792 | |
| 1ake | AP5 | Adenylate kinase | / | 0.790 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.788 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.787 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.786 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.786 | |
| 2fna | ADP | Uncharacterized protein | / | 0.784 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.783 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.783 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.783 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.782 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.782 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.782 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.782 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.781 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.781 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.781 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.780 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.780 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.778 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.777 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.777 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.776 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.776 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.775 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.775 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.773 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.773 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.772 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.771 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.771 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.770 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.769 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.769 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.768 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.768 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.768 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.768 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.768 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.767 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.767 | |
| 4db1 | ANP | Myosin-7 | / | 0.767 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.766 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.765 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.765 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.765 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.764 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.764 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.764 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.764 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.764 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.763 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.763 | |
| 4mkf | AP5 | Adenylate kinase | / | 0.763 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.762 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.760 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.760 | |
| 4v02 | ATP | Site-determining protein | / | 0.760 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.759 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.758 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.758 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.758 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.757 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.756 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.756 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.755 | |
| 2xtn | GTP | GTPase IMAP family member 2 | / | 0.755 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.754 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.754 | |
| 1xmv | ADP | Protein RecA | / | 0.753 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.753 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.752 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.752 | |
| 4jky | ADP | Adenylate kinase | / | 0.752 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.751 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.750 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.750 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.749 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.749 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.749 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.748 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.747 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.747 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.747 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.747 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.746 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.745 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.744 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.743 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.743 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.743 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.742 | |
| 4xvu | ATP | ATPase GET3 | / | 0.742 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.738 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.738 | |
| 2zts | ADP | Uncharacterized protein | / | 0.738 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.738 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.738 | |
| 4qnr | ATP | Psp operon transcriptional activator | / | 0.737 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.736 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.736 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.734 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.734 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.734 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.734 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.733 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.733 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.733 | |
| 4luc | GDP | GTPase KRas | / | 0.732 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.731 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.731 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.730 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.730 | |
| 5cyo | GDP | Septin-9 | / | 0.730 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.729 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.729 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.728 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.727 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.727 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.727 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.726 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.726 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.726 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.726 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.725 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.725 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.723 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.723 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.723 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.720 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.720 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.719 | |
| 2pc9 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.719 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.717 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.717 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.717 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.717 | |
| 1l2t | ATP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.716 | |
| 1njf | ADP | DNA polymerase III subunit tau | 2.7.7.7 | 0.715 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.715 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.715 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.715 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.714 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.714 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.714 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.711 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.711 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.711 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.711 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.710 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.710 | |
| 3ieu | GDP | GTPase Era | / | 0.710 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.709 | |
| 3qbv | GDP | Cell division control protein 42 homolog | / | 0.707 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.707 | |
| 4c30 | ANP | DNA helicase | / | 0.706 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.706 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.705 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.704 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.703 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.703 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.703 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.702 | |
| 2axn | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | / | 0.701 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.699 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.699 | |
| 2i1v | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.699 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.699 | |
| 4i1v | ADP | Dephospho-CoA kinase | / | 0.698 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.697 | |
| 3ea0 | ATP | ATPase, ParA family | / | 0.697 | |
| 2aky | AP5 | Adenylate kinase | / | 0.695 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.695 | |
| 1mab | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.694 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.694 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.694 | |
| 4l8g | GDP | GTPase KRas | / | 0.694 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.693 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.693 | |
| 2ce7 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.693 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.692 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.692 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.692 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.688 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.688 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.688 | |
| 4tyq | AP5 | Adenylate kinase | / | 0.688 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.687 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.687 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.687 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.685 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.684 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.684 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.684 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.683 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.683 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.683 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.682 | |
| 4wpu | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.682 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.681 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.681 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.680 | |
| 4ike | ADP | Adenylate kinase | / | 0.679 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.677 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.677 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.677 | |
| 2eck | ADP | Adenylate kinase | / | 0.676 | |
| 3qpv | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.676 | |
| 5dac | AGS | Uncharacterized protein | / | 0.674 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.672 | |
| 2x19 | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.672 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.672 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.672 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.671 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.669 | |
| 5bn4 | ANP | V-type ATP synthase alpha chain | / | 0.669 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.666 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.664 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.663 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.663 | |
| 2vp0 | TTP | Deoxynucleoside kinase | / | 0.663 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.663 | |
| 5da9 | AGS | Uncharacterized protein | / | 0.662 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.661 | |
| 1e32 | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.660 | |
| 2iuu | ADP | DNA translocase FtsK | / | 0.660 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.660 | |
| 4h1v | GNP | Dynamin-1-like protein | 3.6.5.5 | 0.657 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.657 | |
| 1ank | ANP | Adenylate kinase | / | 0.656 | |
| 3ldw | IPE | Farnesyl pyrophosphate synthase, putative | / | 0.654 | |
| 4mkh | AP5 | Adenylate kinase | / | 0.654 | |
| 4w5j | AP5 | Adenylate kinase | / | 0.653 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.652 | |
| 1dvr | ATF | Adenylate kinase | / | 0.651 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.651 | |
| 2zgy | GDP | Plasmid segregation protein ParM | / | 0.651 | |
| 3nbx | ADP | ATPase RavA | 3.6.3 | 0.651 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.651 | |
| 5fv0 | ONA | ESX secretion system protein EccC | / | 0.651 | |
| 3dl0 | AP5 | Adenylate kinase | / | 0.650 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.650 |