sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4dlv | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4dlv | GNP | GTPase HRas | / | 1.225 | |
| 4dlt | GNP | GTPase HRas | / | 1.221 | |
| 3rs5 | GNP | GTPase HRas | / | 1.219 | |
| 3rs7 | GNP | GTPase HRas | / | 1.219 | |
| 2rgc | GNP | GTPase HRas | / | 1.218 | |
| 3rs4 | GNP | GTPase HRas | / | 1.218 | |
| 4dlx | GNP | GTPase HRas | / | 1.218 | |
| 4dlz | GNP | GTPase HRas | / | 1.218 | |
| 3lbi | GNP | GTPase HRas | / | 1.216 | |
| 3l8y | GNP | GTPase HRas | / | 1.200 | |
| 3rs0 | GNP | GTPase HRas | / | 1.200 | |
| 3rsl | GNP | GTPase HRas | / | 1.200 | |
| 3lbn | GNP | GTPase HRas | / | 1.199 | |
| 4l9w | GNP | GTPase HRas | / | 1.198 | |
| 3i3s | GNP | GTPase HRas | / | 1.197 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.197 | |
| 3k8y | GNP | GTPase HRas | / | 1.196 | |
| 3oiu | GNP | GTPase HRas | / | 1.186 | |
| 3v4f | GNP | GTPase HRas | / | 1.186 | |
| 4dlw | GNP | GTPase HRas | / | 1.185 | |
| 5b2z | GNP | GTPase HRas | / | 1.184 | |
| 2rge | GNP | GTPase HRas | / | 1.183 | |
| 3oiw | GNP | GTPase HRas | / | 1.181 | |
| 3oiv | GNP | GTPase HRas | / | 1.180 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.178 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.178 | |
| 2rgb | GNP | GTPase HRas | / | 1.169 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.167 | |
| 4dls | GNP | GTPase HRas | / | 1.163 | |
| 3ddc | GNP | GTPase HRas | / | 1.153 | |
| 2c5l | GTP | GTPase HRas | / | 1.148 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.140 | |
| 3lbh | GNP | GTPase HRas | / | 1.131 | |
| 4nyj | GNP | GTPase HRas | / | 1.131 | |
| 4dsn | GCP | GTPase KRas | / | 1.130 | |
| 4nyi | GNP | GTPase HRas | / | 1.125 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.100 | |
| 4k81 | GTP | GTPase HRas | / | 1.100 | |
| 3k9l | GNP | GTPase HRas | / | 1.094 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.087 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.087 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.085 | |
| 4g0n | GNP | GTPase HRas | / | 1.084 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.072 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.072 | |
| 4dso | GSP | GTPase KRas | / | 1.071 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 1.070 | |
| 2rgg | GNP | GTPase HRas | / | 1.064 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.063 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.059 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.052 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.042 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.041 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.037 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.035 | |
| 1kmq | GNP | Transforming protein RhoA | / | 1.034 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.028 | |
| 3tgp | GNP | GTPase HRas | / | 1.027 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 1.018 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.014 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.012 | |
| 4xvq | GNP | GTPase HRas | / | 1.011 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.010 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 1.006 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 1.002 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.001 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.998 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 0.997 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.997 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.995 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.988 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.984 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 0.982 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.982 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.981 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.978 | |
| 4mit | GTP | Rho-related protein racC | / | 0.978 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.973 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.969 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.968 | |
| 3kud | GDP | GTPase HRas | / | 0.966 | |
| 4ql3 | GDP | GTPase KRas | / | 0.964 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.962 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.960 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.956 | |
| 1lfd | GNP | GTPase HRas | / | 0.953 | |
| 2cl6 | CAG | GTPase HRas | / | 0.953 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.950 | |
| 4l9s | GDP | GTPase HRas | / | 0.944 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.943 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.943 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.943 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.943 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.942 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.941 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.939 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.939 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.937 | |
| 2ce2 | GDP | GTPase HRas | / | 0.937 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.935 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.934 | |
| 4wa7 | GDP | GTPase KRas | / | 0.934 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.934 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.933 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.932 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.932 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.932 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.931 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.930 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.930 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.928 | |
| 4q02 | GDP | GTPase KRas | / | 0.928 | |
| 4epx | GDP | GTPase KRas | / | 0.925 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.924 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.923 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.923 | |
| 4l8g | GDP | GTPase KRas | / | 0.922 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.921 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.919 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.919 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.917 | |
| 4xvr | GNP | GTPase HRas | / | 0.917 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.915 | |
| 4tq9 | GDP | GTPase KRas | / | 0.914 | |
| 3r9x | GNP | GTPase Era | / | 0.910 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.909 | |
| 4dvg | GSP | Rho family GTPase | / | 0.906 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.906 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.900 | |
| 4epw | GDP | GTPase KRas | / | 0.898 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.896 | |
| 4ldj | GDP | GTPase KRas | / | 0.895 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.894 | |
| 4q03 | GDP | GTPase KRas | / | 0.891 | |
| 4lv6 | GDP | GTPase KRas | / | 0.890 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.889 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.887 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.887 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.886 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.886 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.886 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.885 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.882 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.882 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.880 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.880 | |
| 4obe | GDP | GTPase KRas | / | 0.880 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.879 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.879 | |
| 4dsu | GDP | GTPase KRas | / | 0.877 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.876 | |
| 4lpk | GDP | GTPase KRas | / | 0.876 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.875 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.872 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.871 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.870 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.865 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.863 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.860 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.856 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.856 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.856 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.855 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.855 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.853 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.850 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.849 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.849 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.848 | |
| 4luc | GDP | GTPase KRas | / | 0.848 | |
| 3ftq | GNP | Septin-2 | / | 0.846 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.846 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.840 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.839 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.839 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.837 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.836 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.835 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.834 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.834 | |
| 3ref | GDP | Rho family GTPase | / | 0.830 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.829 | |
| 4lrw | GDP | GTPase KRas | / | 0.829 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.827 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.827 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.826 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.825 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.823 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.823 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.822 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.822 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.821 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.818 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.817 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.816 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.816 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.814 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.813 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.811 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.810 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.808 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.808 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.805 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.804 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.803 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.802 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.801 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.797 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.796 | |
| 4db1 | ANP | Myosin-7 | / | 0.796 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.795 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.793 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.793 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.790 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.789 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.789 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.787 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.786 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.786 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.786 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.786 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.786 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.784 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.784 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.784 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.784 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.783 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.782 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.781 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.777 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.776 | |
| 1ank | ANP | Adenylate kinase | / | 0.773 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.773 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.773 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.773 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.773 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.772 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.771 | |
| 2fna | ADP | Uncharacterized protein | / | 0.771 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.771 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.770 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.770 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.770 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.770 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.770 | |
| 5bn3 | ADP | NEQ263 | / | 0.770 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.769 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.768 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.768 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.766 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.765 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.765 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.762 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.762 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.762 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.761 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.761 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.761 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.761 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.759 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.758 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.757 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.757 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.756 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.756 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.755 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.755 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.755 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.755 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.753 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.753 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.753 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.752 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.752 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.752 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.752 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.751 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.750 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.749 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.749 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.748 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.748 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.747 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.747 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.747 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.747 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.746 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.746 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.745 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.745 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.745 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.744 | |
| 4x8l | AP5 | Adenylate kinase | / | 0.742 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.741 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.741 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.741 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.740 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.739 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.738 | |
| 1xms | ANP | Protein RecA | / | 0.738 | |
| 4v02 | ATP | Site-determining protein | / | 0.738 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.737 | |
| 4ike | ADP | Adenylate kinase | / | 0.737 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.736 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.736 | |
| 4jky | ADP | Adenylate kinase | / | 0.736 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.735 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.735 | |
| 4jld | ADP | Adenylate kinase | / | 0.735 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.734 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.733 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.732 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.732 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.731 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.731 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.731 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.730 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.730 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.728 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.728 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.728 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.727 | |
| 4yqf | GDP | Septin-9 | / | 0.727 | |
| 1xmv | ADP | Protein RecA | / | 0.726 | |
| 2zts | ADP | Uncharacterized protein | / | 0.725 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.725 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.725 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.723 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.723 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.723 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.723 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.722 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.722 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.721 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.720 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.720 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.720 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.719 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.719 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.719 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.719 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.719 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.719 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.719 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.718 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.717 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.717 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.716 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.716 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.716 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.716 | |
| 3hpr | AP5 | Adenylate kinase | / | 0.715 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.714 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.714 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.714 | |
| 5cyo | GDP | Septin-9 | / | 0.713 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.712 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.712 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.711 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.711 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.711 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.710 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.710 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.709 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.709 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.709 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.709 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.708 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.707 | |
| 1nly | AGS | Cag alpha | / | 0.707 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.707 | |
| 2eck | ADP | Adenylate kinase | / | 0.706 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.706 | |
| 3ieu | GDP | GTPase Era | / | 0.705 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.704 | |
| 4c30 | ANP | DNA helicase | / | 0.704 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.703 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.702 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.700 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.700 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.700 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.699 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.698 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.698 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.697 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.697 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.697 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.696 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.694 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.694 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.693 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.693 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.693 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.691 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.691 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.691 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.690 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.689 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.687 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.687 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.686 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.686 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.685 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.684 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.684 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.684 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.683 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.683 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.682 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.682 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.681 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.681 | |
| 4jlo | ADP | Adenylate kinase | / | 0.680 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.680 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.679 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.678 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.678 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.676 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.676 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.676 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.676 | |
| 5dac | AGS | Uncharacterized protein | / | 0.675 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.674 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.674 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.674 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.674 | |
| 2zrj | AGS | Protein RecA | / | 0.673 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.673 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.672 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.672 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.671 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.671 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.670 | |
| 2axn | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | / | 0.670 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.669 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.669 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.668 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.668 | |
| 1zm7 | TTP | Deoxynucleoside kinase | / | 0.667 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.666 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.666 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.666 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.666 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.666 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.664 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.664 | |
| 5fm6 | ADP | RuvB-like helicase | / | 0.664 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.663 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.663 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.663 | |
| 1g9r | UPF | LgtC | / | 0.662 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.661 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.660 | |
| 4qnr | ATP | Psp operon transcriptional activator | / | 0.660 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.659 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.659 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.659 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.659 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.658 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.658 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.658 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.658 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.654 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.654 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.653 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.653 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.652 | |
| 3tpt | ADP | Serine/threonine-protein kinase toxin HipA | / | 0.652 | |
| 5ftc | ADP | TPR domain protein | / | 0.652 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.651 | |
| 4n9w | GDP | Phosphatidyl-myo-inositol mannosyltransferase | 2.4.1.57 | 0.651 | |
| 4xvu | ATP | ATPase GET3 | / | 0.651 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.650 | |
| 2rgx | AP5 | Adenylate kinase | / | 0.650 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.650 | |
| 4qbg | AP5 | Adenylate kinase | / | 0.650 |