Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3tlx | ADP | Adenylate kinase 2 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3tlx | ADP | Adenylate kinase 2 | / | 1.077 | |
| 4jld | ADP | Adenylate kinase | / | 0.853 | |
| 4jlo | ADP | Adenylate kinase | / | 0.853 | |
| 4jky | ADP | Adenylate kinase | / | 0.852 | |
| 4ike | ADP | Adenylate kinase | / | 0.849 | |
| 2rgx | AP5 | Adenylate kinase | / | 0.848 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.832 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.832 | |
| 5bn3 | ADP | NEQ263 | / | 0.832 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.831 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.829 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.827 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.827 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.826 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.820 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.813 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.811 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.803 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.803 | |
| 4tyq | AP5 | Adenylate kinase | / | 0.800 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.799 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.798 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.798 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.797 | |
| 2fna | ADP | Uncharacterized protein | / | 0.795 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.793 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.793 | |
| 1ake | AP5 | Adenylate kinase | / | 0.789 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.788 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.788 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.788 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.786 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.785 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.785 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.785 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.785 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.784 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.784 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.784 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 0.784 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.783 | |
| 1zio | AP5 | Adenylate kinase | / | 0.782 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.781 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.780 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.780 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.780 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.780 | |
| 4ymu | ATP | ABC-type polar amino acid transport system, ATPase component | / | 0.780 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.779 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.779 | |
| 4x8l | AP5 | Adenylate kinase | / | 0.778 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.777 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.777 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.777 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.776 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.775 | |
| 3ref | GDP | Rho family GTPase | / | 0.775 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.773 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.773 | |
| 1xmv | ADP | Protein RecA | / | 0.772 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.772 | |
| 4lpk | GDP | GTPase KRas | / | 0.772 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.771 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.771 | |
| 1e4y | AP5 | Adenylate kinase | / | 0.770 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.770 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.770 | |
| 2zts | ADP | Uncharacterized protein | / | 0.770 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.768 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.768 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.768 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.767 | |
| 2eck | ADP | Adenylate kinase | / | 0.766 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.764 | |
| 3kud | GDP | GTPase HRas | / | 0.763 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.763 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.762 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.762 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.762 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.761 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.761 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.761 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.761 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.760 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.758 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.758 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.758 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.757 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.757 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.757 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.756 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.756 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.756 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.755 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.755 | |
| 3l1c | ADP | Protein claret segregational | / | 0.755 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.755 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.755 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.754 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.753 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.753 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.753 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.753 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.753 | |
| 4lrw | GDP | GTPase KRas | / | 0.753 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.753 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.752 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.752 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.752 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.752 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.752 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.751 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.750 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.749 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.749 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.749 | |
| 4luc | GDP | GTPase KRas | / | 0.749 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 0.748 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.748 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.748 | |
| 3dl0 | AP5 | Adenylate kinase | / | 0.748 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.747 | |
| 3lbn | GNP | GTPase HRas | / | 0.747 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.747 | |
| 4dlt | GNP | GTPase HRas | / | 0.747 | |
| 4dlv | GNP | GTPase HRas | / | 0.747 | |
| 4ldj | GDP | GTPase KRas | / | 0.747 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.746 | |
| 3l8y | GNP | GTPase HRas | / | 0.746 | |
| 3rsl | GNP | GTPase HRas | / | 0.746 | |
| 4dlx | GNP | GTPase HRas | / | 0.746 | |
| 4dlz | GNP | GTPase HRas | / | 0.746 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.746 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.745 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.745 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.745 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.745 | |
| 4zca | ADP | Kinesin-like protein KIF11 | / | 0.745 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.744 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.744 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 0.744 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.744 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.743 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.742 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.742 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.742 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.739 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.739 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.738 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 0.738 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.738 | |
| 2zrj | AGS | Protein RecA | / | 0.738 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.738 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.738 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.738 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.738 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.737 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.737 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.737 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.737 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 0.736 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.736 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.736 | |
| 4mkf | AP5 | Adenylate kinase | / | 0.736 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.735 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.734 | |
| 3oiu | GNP | GTPase HRas | / | 0.734 | |
| 3oiv | GNP | GTPase HRas | / | 0.734 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.733 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.733 | |
| 5b2z | GNP | GTPase HRas | / | 0.733 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.732 | |
| 3rs7 | GNP | GTPase HRas | / | 0.732 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.732 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.732 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.731 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.731 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.730 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.730 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.730 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.730 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.729 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.729 | |
| 3d8b | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.728 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.727 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.727 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.727 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.727 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.727 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.727 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.726 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.726 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.726 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.726 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.726 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.726 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.726 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.725 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.725 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.725 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.724 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.724 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.723 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.723 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.723 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.723 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.722 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.722 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.721 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.721 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.720 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 0.720 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.719 | |
| 3oiw | GNP | GTPase HRas | / | 0.719 | |
| 3qbv | GDP | Cell division control protein 42 homolog | / | 0.719 | |
| 4epx | GDP | GTPase KRas | / | 0.719 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.719 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.718 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.718 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 0.718 | |
| 1ank | ANP | Adenylate kinase | / | 0.717 | |
| 3rs0 | GNP | GTPase HRas | / | 0.717 | |
| 3rs4 | GNP | GTPase HRas | / | 0.717 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.717 | |
| 5ftc | ADP | TPR domain protein | / | 0.717 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.716 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.715 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 0.715 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.715 | |
| 3k9l | GNP | GTPase HRas | / | 0.715 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.714 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.714 | |
| 2xsz | ATP | RuvB-like 2 | 3.6.4.12 | 0.714 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.714 | |
| 4qbi | AP5 | Adenylate kinase | / | 0.714 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.714 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.713 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.713 | |
| 4dso | GSP | GTPase KRas | / | 0.713 | |
| 4iei | ADP | Gene 2 protein | / | 0.713 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.713 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.712 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.712 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.712 | |
| 4x8o | AP5 | Adenylate kinase | / | 0.712 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.711 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.711 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.710 | |
| 1sxj | ADP | Replication factor C subunit 5 | / | 0.709 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.709 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.709 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 0.709 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.708 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.708 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.708 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.708 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.708 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.708 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.707 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.707 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.707 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.706 | |
| 1s3g | AP5 | Adenylate kinase | / | 0.705 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.705 | |
| 4epw | GDP | GTPase KRas | / | 0.705 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.705 | |
| 1e4v | AP5 | Adenylate kinase | / | 0.702 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.702 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.702 | |
| 3tgp | GNP | GTPase HRas | / | 0.702 | |
| 4xvq | GNP | GTPase HRas | / | 0.702 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.701 | |
| 2zro | ADP | Protein RecA | / | 0.701 | |
| 3hpr | AP5 | Adenylate kinase | / | 0.701 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.701 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 0.701 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.700 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.699 | |
| 3thy | ADP | DNA mismatch repair protein Msh2 | / | 0.699 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.699 | |
| 1l2t | ATP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.698 | |
| 1lfd | GNP | GTPase HRas | / | 0.698 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.698 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.698 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.698 | |
| 4mit | GTP | Rho-related protein racC | / | 0.698 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.697 | |
| 1p3j | AP5 | Adenylate kinase | / | 0.697 | |
| 4i1v | ADP | Dephospho-CoA kinase | / | 0.697 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.696 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.696 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.696 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.696 | |
| 4mkg | AP5 | Adenylate kinase | / | 0.696 | |
| 4rz3 | ADP | Site-determining protein | / | 0.696 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.695 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.695 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.695 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.695 | |
| 3lbh | GNP | GTPase HRas | / | 0.695 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.695 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.695 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.694 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.694 | |
| 4dsn | GCP | GTPase KRas | / | 0.694 | |
| 1w7i | ADP | Unconventional myosin-Va | / | 0.693 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.692 | |
| 2ce2 | GDP | GTPase HRas | / | 0.692 | |
| 3dkv | AP5 | Adenylate kinase | / | 0.692 | |
| 4l9s | GDP | GTPase HRas | / | 0.692 | |
| 4mkh | AP5 | Adenylate kinase | / | 0.692 | |
| 4wa7 | GDP | GTPase KRas | / | 0.692 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.690 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.690 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.689 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.689 | |
| 1kqm | ANP | Myosin heavy chain, striated muscle | / | 0.688 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.688 | |
| 4qbh | AP5 | Adenylate kinase | / | 0.688 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.687 | |
| 4l9w | GNP | GTPase HRas | / | 0.687 | |
| 4wpu | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.687 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.686 | |
| 2ce7 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.686 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.686 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.686 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.685 | |
| 4w5j | AP5 | Adenylate kinase | / | 0.685 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.684 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.684 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.684 | |
| 4xvu | ATP | ATPase GET3 | / | 0.684 | |
| 1nly | AGS | Cag alpha | / | 0.683 | |
| 1xp8 | AGS | Protein RecA | / | 0.683 | |
| 4e03 | ADP | Plasmid partitioning protein ParF | / | 0.683 | |
| 4tq9 | GDP | GTPase KRas | / | 0.683 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.682 | |
| 4l8g | GDP | GTPase KRas | / | 0.682 | |
| 4q02 | GDP | GTPase KRas | / | 0.682 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.681 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.681 | |
| 4q03 | GDP | GTPase KRas | / | 0.681 | |
| 4ql3 | GDP | GTPase KRas | / | 0.681 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.679 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.679 | |
| 2rgg | GNP | GTPase HRas | / | 0.678 | |
| 4xvr | GNP | GTPase HRas | / | 0.678 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.677 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.677 | |
| 2dft | ADP | Shikimate kinase | 2.7.1.71 | 0.677 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.677 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.676 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.676 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.675 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.675 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.675 | |
| 4obe | GDP | GTPase KRas | / | 0.675 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.674 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.674 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.674 | |
| 4dls | GNP | GTPase HRas | / | 0.674 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.674 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.673 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.673 | |
| 3ieu | GDP | GTPase Era | / | 0.673 | |
| 4yqf | GDP | Septin-9 | / | 0.673 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.672 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.672 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.671 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.671 | |
| 4lv6 | GDP | GTPase KRas | / | 0.671 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.670 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.669 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.669 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 0.668 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.666 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.666 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 0.666 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.665 | |
| 1im2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.665 | |
| 2q2z | ADP | Kinesin-like protein KIF11 | / | 0.665 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.665 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.665 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.665 | |
| 3ftq | GNP | Septin-2 | / | 0.665 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.665 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.664 | |
| 4e07 | ACP | Plasmid partitioning protein ParF | / | 0.664 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.664 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.663 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.663 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.663 | |
| 5cyo | GDP | Septin-9 | / | 0.663 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.662 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.661 | |
| 1n6m | ADP | Protein claret segregational | / | 0.661 | |
| 3af1 | GDP | Pantothenate kinase | 2.7.1.33 | 0.661 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.661 | |
| 5fm6 | ADP | RuvB-like helicase | / | 0.661 | |
| 1e32 | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.659 | |
| 3kb1 | ADP | Iron-sulfur cluster carrier protein | / | 0.659 | |
| 3r9x | GNP | GTPase Era | / | 0.658 | |
| 4c2u | ANP | DNA helicase | / | 0.658 | |
| 4dsu | GDP | GTPase KRas | / | 0.658 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.657 | |
| 1g6o | ADP | Cag alpha | / | 0.655 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.655 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.654 | |
| 4c30 | ANP | DNA helicase | / | 0.654 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.653 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.653 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.653 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.653 | |
| 4bub | ADP | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase | / | 0.651 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.650 | |
| 3dzd | ADP | Transcriptional regulator (NtrC family) | / | 0.650 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.650 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.650 |