sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3tgp | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3tgp | GNP | GTPase HRas | / | 1.076 | |
| 4g0n | GNP | GTPase HRas | / | 1.060 | |
| 2rgg | GNP | GTPase HRas | / | 1.049 | |
| 3i3s | GNP | GTPase HRas | / | 1.046 | |
| 3k8y | GNP | GTPase HRas | / | 1.046 | |
| 3oiw | GNP | GTPase HRas | / | 1.046 | |
| 3rs5 | GNP | GTPase HRas | / | 1.046 | |
| 3rs0 | GNP | GTPase HRas | / | 1.045 | |
| 3rs4 | GNP | GTPase HRas | / | 1.045 | |
| 3rs7 | GNP | GTPase HRas | / | 1.045 | |
| 3rsl | GNP | GTPase HRas | / | 1.045 | |
| 3v4f | GNP | GTPase HRas | / | 1.045 | |
| 3l8y | GNP | GTPase HRas | / | 1.044 | |
| 4dlw | GNP | GTPase HRas | / | 1.044 | |
| 4dlz | GNP | GTPase HRas | / | 1.044 | |
| 4l9w | GNP | GTPase HRas | / | 1.044 | |
| 3lbi | GNP | GTPase HRas | / | 1.043 | |
| 5b2z | GNP | GTPase HRas | / | 1.043 | |
| 3k9l | GNP | GTPase HRas | / | 1.042 | |
| 4dlx | GNP | GTPase HRas | / | 1.042 | |
| 4xvq | GNP | GTPase HRas | / | 1.031 | |
| 3lbn | GNP | GTPase HRas | / | 1.029 | |
| 4dls | GNP | GTPase HRas | / | 1.029 | |
| 3oiu | GNP | GTPase HRas | / | 1.028 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.028 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.028 | |
| 4nyj | GNP | GTPase HRas | / | 1.028 | |
| 4dlt | GNP | GTPase HRas | / | 1.027 | |
| 4dlv | GNP | GTPase HRas | / | 1.027 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.026 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.026 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.025 | |
| 3oiv | GNP | GTPase HRas | / | 1.025 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.025 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.024 | |
| 2rgc | GNP | GTPase HRas | / | 1.024 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.023 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.022 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.020 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.020 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.016 | |
| 3ddc | GNP | GTPase HRas | / | 1.014 | |
| 2rge | GNP | GTPase HRas | / | 1.012 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.012 | |
| 3lbh | GNP | GTPase HRas | / | 1.011 | |
| 4k81 | GTP | GTPase HRas | / | 1.009 | |
| 2rgb | GNP | GTPase HRas | / | 1.008 | |
| 2c5l | GTP | GTPase HRas | / | 1.007 | |
| 4nyi | GNP | GTPase HRas | / | 1.007 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.005 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.005 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.004 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.003 | |
| 4dso | GSP | GTPase KRas | / | 1.002 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.991 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 0.989 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.989 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.988 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.985 | |
| 4dsn | GCP | GTPase KRas | / | 0.984 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 0.975 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.975 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.974 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.971 | |
| 4xvr | GNP | GTPase HRas | / | 0.969 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.965 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.963 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.960 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.959 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.958 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.957 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.957 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.957 | |
| 1lfd | GNP | GTPase HRas | / | 0.956 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.955 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.954 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.954 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.954 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.953 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.953 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.952 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.950 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.945 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.944 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.941 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.941 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.939 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.939 | |
| 4mit | GTP | Rho-related protein racC | / | 0.939 | |
| 4dvg | GSP | Rho family GTPase | / | 0.936 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.935 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.934 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.934 | |
| 2cl6 | CAG | GTPase HRas | / | 0.933 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.925 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.924 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.922 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.920 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.917 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.917 | |
| 4l9s | GDP | GTPase HRas | / | 0.917 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.916 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.916 | |
| 2ce2 | GDP | GTPase HRas | / | 0.915 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.914 | |
| 4ql3 | GDP | GTPase KRas | / | 0.914 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.913 | |
| 4lv6 | GDP | GTPase KRas | / | 0.913 | |
| 4q02 | GDP | GTPase KRas | / | 0.913 | |
| 4q03 | GDP | GTPase KRas | / | 0.913 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.912 | |
| 4tq9 | GDP | GTPase KRas | / | 0.912 | |
| 4wa7 | GDP | GTPase KRas | / | 0.912 | |
| 4dsu | GDP | GTPase KRas | / | 0.911 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.911 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.911 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.909 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.908 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.907 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.902 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.902 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.901 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.900 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.899 | |
| 3kud | GDP | GTPase HRas | / | 0.898 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.896 | |
| 4epw | GDP | GTPase KRas | / | 0.895 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.894 | |
| 3r9x | GNP | GTPase Era | / | 0.894 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.893 | |
| 4epx | GDP | GTPase KRas | / | 0.893 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.890 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.889 | |
| 4l8g | GDP | GTPase KRas | / | 0.884 | |
| 4lpk | GDP | GTPase KRas | / | 0.883 | |
| 4ldj | GDP | GTPase KRas | / | 0.879 | |
| 4obe | GDP | GTPase KRas | / | 0.879 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.878 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.878 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.878 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.878 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.878 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.874 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.874 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.874 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.873 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.873 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.870 | |
| 4luc | GDP | GTPase KRas | / | 0.868 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.864 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.863 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.863 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.863 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.860 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.858 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.857 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.856 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.855 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.850 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.849 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.848 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.847 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.845 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.845 | |
| 4lrw | GDP | GTPase KRas | / | 0.845 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.844 | |
| 3ref | GDP | Rho family GTPase | / | 0.844 | |
| 3ftq | GNP | Septin-2 | / | 0.843 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.841 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.839 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.838 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.838 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.835 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.834 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.829 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.826 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.824 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.822 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.821 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.821 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.820 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.818 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.818 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.818 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.816 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.815 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.814 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.810 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.809 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.809 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.808 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.808 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.806 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.802 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.799 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.798 | |
| 4db1 | ANP | Myosin-7 | / | 0.798 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.798 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.797 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.797 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.796 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.796 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.795 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.794 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.793 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.791 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.789 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.788 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.786 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.786 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.786 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.786 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.785 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.785 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.784 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.784 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.782 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.781 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.780 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.780 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.779 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.778 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.778 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.778 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.778 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.777 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.776 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.775 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.775 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.775 | |
| 4xvu | ATP | ATPase GET3 | / | 0.775 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.774 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.774 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.774 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.771 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.769 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.768 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.768 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.767 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.767 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.766 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.765 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.765 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.764 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.763 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.763 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.762 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.761 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.761 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.760 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.759 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.759 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.759 | |
| 1ank | ANP | Adenylate kinase | / | 0.758 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.758 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.758 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.758 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.758 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.757 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.757 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.757 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.755 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.754 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.753 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.753 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.753 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.753 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.753 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.752 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.752 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.752 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.752 | |
| 4v02 | ATP | Site-determining protein | / | 0.752 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.750 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.750 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.750 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.749 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.749 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.749 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.747 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.747 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.746 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.746 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.745 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.745 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.745 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.744 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.744 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.744 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.742 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.742 | |
| 5cyo | GDP | Septin-9 | / | 0.742 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.741 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.741 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.741 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.741 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.741 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.740 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.739 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.739 | |
| 1xmv | ADP | Protein RecA | / | 0.738 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.738 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.738 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.737 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.737 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.736 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.736 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.736 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.736 | |
| 3ieu | GDP | GTPase Era | / | 0.735 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.735 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.734 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.733 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.733 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.733 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.733 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.732 | |
| 2fna | ADP | Uncharacterized protein | / | 0.732 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.731 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.731 | |
| 2zts | ADP | Uncharacterized protein | / | 0.731 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.731 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.731 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.730 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.730 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.729 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.729 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.729 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.728 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.726 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.726 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.726 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.726 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.725 | |
| 4yqf | GDP | Septin-9 | / | 0.725 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.724 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.723 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.723 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.723 | |
| 1xms | ANP | Protein RecA | / | 0.722 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.722 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.722 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.722 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.722 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.722 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.721 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.721 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.720 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.720 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.720 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.719 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.719 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.719 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.719 | |
| 5ftc | ADP | TPR domain protein | / | 0.719 | |
| 2whx | ADP | Genome polyprotein | 3.4.21.91 | 0.718 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.718 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.717 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.717 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.717 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.717 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.716 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.716 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.716 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.716 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.715 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.715 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.715 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.714 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.713 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.713 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.713 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.713 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.713 | |
| 4ike | ADP | Adenylate kinase | / | 0.713 | |
| 4jld | ADP | Adenylate kinase | / | 0.713 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.712 | |
| 2vp0 | TTP | Deoxynucleoside kinase | / | 0.712 | |
| 2xsz | ATP | RuvB-like 2 | 3.6.4.12 | 0.712 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.712 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.711 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.710 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.709 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.709 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.709 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.708 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.708 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.708 | |
| 1nly | AGS | Cag alpha | / | 0.707 | |
| 4jky | ADP | Adenylate kinase | / | 0.706 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.706 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.705 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.705 | |
| 2jcs | TTP | Deoxynucleoside kinase | / | 0.705 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.704 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.704 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.703 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.702 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.702 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.700 | |
| 2axn | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | / | 0.700 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.700 | |
| 4jlo | ADP | Adenylate kinase | / | 0.700 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.699 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.699 | |
| 1j7k | ATP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.698 | |
| 2ce7 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.698 | |
| 3l1c | ADP | Protein claret segregational | / | 0.698 | |
| 3qpv | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.698 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.698 | |
| 2i1v | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.697 | |
| 3ea0 | ATP | ATPase, ParA family | / | 0.697 | |
| 4ma4 | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.697 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.695 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.695 | |
| 1ni4 | TPP | Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial | 1.2.4.1 | 0.693 | |
| 1ni4 | TPP | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial | 1.2.4.1 | 0.693 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.693 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.693 | |
| 2eck | ADP | Adenylate kinase | / | 0.691 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.691 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.691 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.691 | |
| 4c30 | ANP | DNA helicase | / | 0.690 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.689 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.689 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.689 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.689 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.688 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.688 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.688 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.687 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.686 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.685 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.685 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.685 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.684 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.684 | |
| 2zr9 | DTP | Protein RecA | / | 0.682 | |
| 3d8b | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.682 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.681 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.681 | |
| 1njf | ADP | DNA polymerase III subunit tau | 2.7.7.7 | 0.680 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.680 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.679 | |
| 1xbt | TTP | Thymidine kinase, cytosolic | 2.7.1.21 | 0.679 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.679 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.679 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.679 | |
| 3qbv | GDP | Cell division control protein 42 homolog | / | 0.678 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.677 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.676 | |
| 5da9 | AGS | Uncharacterized protein | / | 0.676 | |
| 2zro | ADP | Protein RecA | / | 0.675 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.675 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.675 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.675 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA2 | 3.6.3 | 0.673 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA1 | / | 0.673 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.672 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.670 | |
| 1g6o | ADP | Cag alpha | / | 0.669 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.669 | |
| 5jqg | GTP | Tubulin alpha-1B chain | / | 0.669 | |
| 4rz3 | ADP | Site-determining protein | / | 0.668 | |
| 1im2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.667 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.667 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.667 | |
| 2x19 | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.667 | |
| 4tuy | GTP | Tubulin alpha-1B chain | / | 0.667 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.665 | |
| 3exh | TPP | Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial | 1.2.4.1 | 0.665 | |
| 3exh | TPP | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial | 1.2.4.1 | 0.665 | |
| 1ols | TDP | 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial | 1.2.4.4 | 0.664 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.663 | |
| 2uz3 | TTP | Thymidine kinase | / | 0.663 | |
| 3uk6 | ADP | RuvB-like 2 | 3.6.4.12 | 0.663 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.663 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.662 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.661 | |
| 2f94 | BFQ | Farnesyl pyrophosphate synthase | 2.5.1.10 | 0.661 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.660 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.660 | |
| 1po7 | TZD | Benzoylformate decarboxylase | 4.1.1.7 | 0.660 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.659 | |
| 4iei | ADP | Gene 2 protein | / | 0.659 | |
| 2r6g | ATP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.658 | |
| 2zsa | ADP | Pantothenate kinase | 2.7.1.33 | 0.658 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.657 | |
| 1s3s | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.656 | |
| 2zs9 | ADP | Pantothenate kinase | 2.7.1.33 | 0.656 | |
| 2zsb | ADP | Pantothenate kinase | 2.7.1.33 | 0.656 | |
| 4dwb | 0M7 | Farnesyl pyrophosphate synthase | / | 0.656 | |
| 4e32 | DWN | Methyltransferase | / | 0.656 | |
| 4h5d | YS4 | Farnesyl pyrophosphate synthase | 2.5.1.10 | 0.656 | |
| 1ndc | TYD | Nucleoside diphosphate kinase, cytosolic | 2.7.4.6 | 0.655 | |
| 2ywv | ADP | Phosphoribosylaminoimidazole-succinocarboxamide synthase | / | 0.655 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.655 | |
| 1ss9 | UPF | LgtC | / | 0.654 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.654 | |
| 3mhy | ATP | Nitrogen regulatory protein P-II 1 | / | 0.654 | |
| 5cyp | GSP | Septin-9 | / | 0.654 | |
| 1bfd | TPP | Benzoylformate decarboxylase | 4.1.1.7 | 0.653 | |
| 2a84 | ATP | Pantothenate synthetase | 6.3.2.1 | 0.653 | |
| 2ji6 | TPW | Oxalyl-CoA decarboxylase | 4.1.1.8 | 0.653 | |
| 2jib | TPP | Oxalyl-CoA decarboxylase | 4.1.1.8 | 0.653 | |
| 2v3w | TPP | Benzoylformate decarboxylase | 4.1.1.7 | 0.653 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.652 | |
| 4gm4 | TZD | Benzoylformate decarboxylase | 4.1.1.7 | 0.652 | |
| 4jd5 | TZD | Benzoylformate decarboxylase | 4.1.1.7 | 0.652 | |
| 4ju8 | TZD | Benzoylformate decarboxylase | 4.1.1.7 | 0.652 | |
| 4mpr | TPP | Benzoylformate decarboxylase | 4.1.1.7 | 0.652 | |
| 4gm1 | TZD | Benzoylformate decarboxylase | 4.1.1.7 | 0.651 | |
| 4k9n | TZD | Benzoylformate decarboxylase | 4.1.1.7 | 0.651 | |
| 4nm9 | FAD | Bifunctional protein PutA | / | 0.650 | |
| 5dgt | TZD | Benzoylformate decarboxylase | 4.1.1.7 | 0.650 |