sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3rsl | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3rsl | GNP | GTPase HRas | / | 1.241 | |
| 3rs0 | GNP | GTPase HRas | / | 1.236 | |
| 3l8y | GNP | GTPase HRas | / | 1.234 | |
| 3lbn | GNP | GTPase HRas | / | 1.234 | |
| 4l9w | GNP | GTPase HRas | / | 1.234 | |
| 3rs4 | GNP | GTPase HRas | / | 1.218 | |
| 3rs5 | GNP | GTPase HRas | / | 1.218 | |
| 3rs7 | GNP | GTPase HRas | / | 1.218 | |
| 3oiw | GNP | GTPase HRas | / | 1.217 | |
| 4dlz | GNP | GTPase HRas | / | 1.216 | |
| 4dlx | GNP | GTPase HRas | / | 1.215 | |
| 3i3s | GNP | GTPase HRas | / | 1.200 | |
| 3k8y | GNP | GTPase HRas | / | 1.200 | |
| 3lbi | GNP | GTPase HRas | / | 1.200 | |
| 4dlt | GNP | GTPase HRas | / | 1.200 | |
| 4dlv | GNP | GTPase HRas | / | 1.200 | |
| 2rgc | GNP | GTPase HRas | / | 1.196 | |
| 3oiv | GNP | GTPase HRas | / | 1.196 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.185 | |
| 3v4f | GNP | GTPase HRas | / | 1.184 | |
| 4dlw | GNP | GTPase HRas | / | 1.183 | |
| 5b2z | GNP | GTPase HRas | / | 1.181 | |
| 4g0n | GNP | GTPase HRas | / | 1.179 | |
| 3oiu | GNP | GTPase HRas | / | 1.167 | |
| 2rge | GNP | GTPase HRas | / | 1.166 | |
| 3lbh | GNP | GTPase HRas | / | 1.163 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.163 | |
| 4dls | GNP | GTPase HRas | / | 1.163 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.162 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.161 | |
| 2c5l | GTP | GTPase HRas | / | 1.150 | |
| 4dsn | GCP | GTPase KRas | / | 1.148 | |
| 2rgb | GNP | GTPase HRas | / | 1.147 | |
| 3ddc | GNP | GTPase HRas | / | 1.146 | |
| 4nyj | GNP | GTPase HRas | / | 1.128 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.123 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.119 | |
| 4k81 | GTP | GTPase HRas | / | 1.117 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.109 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.107 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.106 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.104 | |
| 3k9l | GNP | GTPase HRas | / | 1.096 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.090 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 1.088 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.084 | |
| 4nyi | GNP | GTPase HRas | / | 1.079 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.067 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.067 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.050 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.045 | |
| 3tgp | GNP | GTPase HRas | / | 1.045 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.043 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 1.040 | |
| 1kmq | GNP | Transforming protein RhoA | / | 1.038 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.036 | |
| 2rgg | GNP | GTPase HRas | / | 1.036 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.036 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.035 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.032 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.025 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 1.025 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 1.021 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.019 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 1.016 | |
| 4xvq | GNP | GTPase HRas | / | 1.010 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 1.008 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.008 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.007 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 1.000 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 0.995 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.995 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.992 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.991 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.991 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.989 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.988 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.985 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.984 | |
| 3kud | GDP | GTPase HRas | / | 0.984 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.983 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.983 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.980 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.978 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.976 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.976 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.972 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.967 | |
| 4dso | GSP | GTPase KRas | / | 0.966 | |
| 2ce2 | GDP | GTPase HRas | / | 0.965 | |
| 4ql3 | GDP | GTPase KRas | / | 0.963 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.962 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.959 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.957 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.956 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.953 | |
| 2cl6 | CAG | GTPase HRas | / | 0.952 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.950 | |
| 4l9s | GDP | GTPase HRas | / | 0.950 | |
| 4mit | GTP | Rho-related protein racC | / | 0.950 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.947 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.947 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.945 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.943 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.941 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.938 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.938 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.936 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.935 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.934 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.932 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.932 | |
| 4wa7 | GDP | GTPase KRas | / | 0.930 | |
| 4q02 | GDP | GTPase KRas | / | 0.927 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.924 | |
| 4epx | GDP | GTPase KRas | / | 0.923 | |
| 1lfd | GNP | GTPase HRas | / | 0.922 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.922 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.922 | |
| 4l8g | GDP | GTPase KRas | / | 0.921 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.920 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.919 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.918 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.917 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.915 | |
| 4xvr | GNP | GTPase HRas | / | 0.915 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.914 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.914 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.913 | |
| 4tq9 | GDP | GTPase KRas | / | 0.913 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.912 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.912 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.911 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.911 | |
| 3r9x | GNP | GTPase Era | / | 0.909 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.909 | |
| 4lv6 | GDP | GTPase KRas | / | 0.907 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.903 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.902 | |
| 4dvg | GSP | Rho family GTPase | / | 0.899 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.898 | |
| 4epw | GDP | GTPase KRas | / | 0.897 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.895 | |
| 4ldj | GDP | GTPase KRas | / | 0.894 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.893 | |
| 4dsu | GDP | GTPase KRas | / | 0.891 | |
| 4q03 | GDP | GTPase KRas | / | 0.890 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.886 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.886 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.884 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.880 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.879 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.878 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.878 | |
| 4obe | GDP | GTPase KRas | / | 0.878 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.876 | |
| 4lpk | GDP | GTPase KRas | / | 0.875 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.874 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.873 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.867 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.864 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.862 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.862 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.862 | |
| 3ftq | GNP | Septin-2 | / | 0.860 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.859 | |
| 4lrw | GDP | GTPase KRas | / | 0.858 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.857 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.854 | |
| 4luc | GDP | GTPase KRas | / | 0.849 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.848 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.848 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.846 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.846 | |
| 3ref | GDP | Rho family GTPase | / | 0.845 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.843 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.843 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.840 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.840 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.838 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.837 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.837 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.837 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.836 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.836 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.835 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.835 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.834 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.832 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.832 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.832 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.828 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.828 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.827 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.826 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.826 | |
| 4db1 | ANP | Myosin-7 | / | 0.826 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.826 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.822 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.820 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.819 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.817 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.817 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.816 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.816 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.816 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.815 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.814 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.813 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.813 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.813 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.812 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.810 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.808 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.804 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.799 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.798 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.795 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.794 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.793 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.792 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.791 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.790 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.789 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.786 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.786 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.786 | |
| 5bn3 | ADP | NEQ263 | / | 0.786 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.785 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.784 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.784 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.783 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.780 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.780 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.779 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.779 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.777 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.774 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.773 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.773 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.771 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.769 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.769 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.768 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.767 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.764 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.763 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.763 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.762 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.762 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.762 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.762 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.760 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.760 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.759 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.759 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.757 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.757 | |
| 1ank | ANP | Adenylate kinase | / | 0.755 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.755 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.755 | |
| 2fna | ADP | Uncharacterized protein | / | 0.755 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.755 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.755 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.754 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.754 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.750 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.749 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.749 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.747 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.747 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.746 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.746 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.746 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.744 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.743 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.740 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.740 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.740 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.740 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.737 | |
| 1xms | ANP | Protein RecA | / | 0.737 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.737 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.737 | |
| 4v02 | ATP | Site-determining protein | / | 0.737 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.736 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.736 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.736 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.736 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.736 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.736 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.735 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.735 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.734 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.734 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.732 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.731 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.730 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.728 | |
| 3hpr | AP5 | Adenylate kinase | / | 0.728 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.728 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.727 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.727 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.727 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.727 | |
| 4yqf | GDP | Septin-9 | / | 0.727 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.726 | |
| 1xmv | ADP | Protein RecA | / | 0.725 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.725 | |
| 2zts | ADP | Uncharacterized protein | / | 0.724 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.723 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.723 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.721 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.721 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.720 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.720 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.720 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.719 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.719 | |
| 4jky | ADP | Adenylate kinase | / | 0.719 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.718 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.718 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.718 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.717 | |
| 4c30 | ANP | DNA helicase | / | 0.717 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.717 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.716 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.716 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.715 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.715 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.713 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.713 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.712 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.712 | |
| 5cyo | GDP | Septin-9 | / | 0.712 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.711 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.711 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.711 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.710 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.709 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.709 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.709 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.708 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.708 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.707 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.707 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.707 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.707 | |
| 1nly | AGS | Cag alpha | / | 0.706 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.706 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.705 | |
| 4qbi | AP5 | Adenylate kinase | / | 0.704 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.703 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.702 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.702 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.700 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.700 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.700 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.700 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.698 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.698 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.698 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.697 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.697 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.697 | |
| 3ea0 | ATP | ATPase, ParA family | / | 0.694 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.694 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.694 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.693 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.692 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.692 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.691 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.690 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.690 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.690 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.690 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.689 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.687 | |
| 4xvu | ATP | ATPase GET3 | / | 0.687 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.687 | |
| 1ake | AP5 | Adenylate kinase | / | 0.685 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.685 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.684 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.684 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.683 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.682 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.682 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.681 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.681 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.680 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.680 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.679 | |
| 2zrj | AGS | Protein RecA | / | 0.678 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.677 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.677 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.675 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.674 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.674 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.674 | |
| 4jlo | ADP | Adenylate kinase | / | 0.674 | |
| 4pl0 | ANP | Microcin-J25 export ATP-binding/permease protein McjD | / | 0.673 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.672 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.672 | |
| 2dft | ADP | Shikimate kinase | 2.7.1.71 | 0.671 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.671 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.671 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.670 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.669 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.668 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.667 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.667 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.666 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.666 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.666 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.666 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.665 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.665 | |
| 1dvr | ATF | Adenylate kinase | / | 0.664 | |
| 5itz | GTP | Tubulin alpha-1B chain | / | 0.663 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.662 | |
| 5dac | AGS | Uncharacterized protein | / | 0.662 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.661 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.661 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.661 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.660 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.659 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.659 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.658 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.657 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.657 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.657 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.657 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.657 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.656 | |
| 1im2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.653 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.653 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.653 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.652 | |
| 2q9c | GNP | Signal recognition particle receptor FtsY | / | 0.651 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.651 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.650 | |
| 2rgx | AP5 | Adenylate kinase | / | 0.650 |