sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3rs5 | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3rs5 | GNP | GTPase HRas | / | 1.241 | |
| 3rs4 | GNP | GTPase HRas | / | 1.238 | |
| 3rs7 | GNP | GTPase HRas | / | 1.237 | |
| 4dlz | GNP | GTPase HRas | / | 1.236 | |
| 4dlx | GNP | GTPase HRas | / | 1.234 | |
| 4dlt | GNP | GTPase HRas | / | 1.219 | |
| 4dlv | GNP | GTPase HRas | / | 1.219 | |
| 3rs0 | GNP | GTPase HRas | / | 1.218 | |
| 3rsl | GNP | GTPase HRas | / | 1.218 | |
| 2rgc | GNP | GTPase HRas | / | 1.216 | |
| 3l8y | GNP | GTPase HRas | / | 1.216 | |
| 3lbn | GNP | GTPase HRas | / | 1.216 | |
| 4l9w | GNP | GTPase HRas | / | 1.216 | |
| 3i3s | GNP | GTPase HRas | / | 1.209 | |
| 4g0n | GNP | GTPase HRas | / | 1.204 | |
| 3v4f | GNP | GTPase HRas | / | 1.203 | |
| 4dlw | GNP | GTPase HRas | / | 1.202 | |
| 5b2z | GNP | GTPase HRas | / | 1.201 | |
| 3oiw | GNP | GTPase HRas | / | 1.196 | |
| 3k8y | GNP | GTPase HRas | / | 1.188 | |
| 3lbi | GNP | GTPase HRas | / | 1.188 | |
| 3oiu | GNP | GTPase HRas | / | 1.186 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.183 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.182 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.181 | |
| 4dls | GNP | GTPase HRas | / | 1.181 | |
| 3oiv | GNP | GTPase HRas | / | 1.180 | |
| 2rge | GNP | GTPase HRas | / | 1.175 | |
| 2rgb | GNP | GTPase HRas | / | 1.167 | |
| 3lbh | GNP | GTPase HRas | / | 1.167 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.166 | |
| 4dsn | GCP | GTPase KRas | / | 1.149 | |
| 2c5l | GTP | GTPase HRas | / | 1.148 | |
| 4nyj | GNP | GTPase HRas | / | 1.148 | |
| 3ddc | GNP | GTPase HRas | / | 1.146 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 1.139 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.138 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.115 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.111 | |
| 3k9l | GNP | GTPase HRas | / | 1.103 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.101 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.098 | |
| 4nyi | GNP | GTPase HRas | / | 1.098 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.094 | |
| 4k81 | GTP | GTPase HRas | / | 1.089 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.085 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.079 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.073 | |
| 4dso | GSP | GTPase KRas | / | 1.071 | |
| 2rgg | GNP | GTPase HRas | / | 1.066 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.065 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.057 | |
| 3tgp | GNP | GTPase HRas | / | 1.046 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.043 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.041 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.038 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.034 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.034 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.034 | |
| 1kmq | GNP | Transforming protein RhoA | / | 1.033 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.032 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 1.024 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 1.018 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.018 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 1.017 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.016 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 1.016 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.015 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 1.015 | |
| 4mit | GTP | Rho-related protein racC | / | 1.014 | |
| 4xvq | GNP | GTPase HRas | / | 1.009 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 1.007 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 1.000 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.999 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.993 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.989 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.989 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.987 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.986 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.986 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.986 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.983 | |
| 3kud | GDP | GTPase HRas | / | 0.980 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.978 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.977 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.975 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.971 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.967 | |
| 2ce2 | GDP | GTPase HRas | / | 0.966 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.964 | |
| 4ql3 | GDP | GTPase KRas | / | 0.964 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.963 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.961 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.958 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.952 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.952 | |
| 4l9s | GDP | GTPase HRas | / | 0.951 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.950 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.945 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.945 | |
| 4wa7 | GDP | GTPase KRas | / | 0.945 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.944 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.943 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.943 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.942 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.942 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.940 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.937 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.936 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.935 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.935 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.933 | |
| 4lv6 | GDP | GTPase KRas | / | 0.932 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.932 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.931 | |
| 4q02 | GDP | GTPase KRas | / | 0.928 | |
| 4tq9 | GDP | GTPase KRas | / | 0.928 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.924 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.924 | |
| 4epx | GDP | GTPase KRas | / | 0.924 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.923 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.922 | |
| 4l8g | GDP | GTPase KRas | / | 0.922 | |
| 1lfd | GNP | GTPase HRas | / | 0.921 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.921 | |
| 4dsu | GDP | GTPase KRas | / | 0.918 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.918 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.917 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.917 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.916 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.916 | |
| 4dvg | GSP | Rho family GTPase | / | 0.915 | |
| 4q03 | GDP | GTPase KRas | / | 0.915 | |
| 4xvr | GNP | GTPase HRas | / | 0.915 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.913 | |
| 4epw | GDP | GTPase KRas | / | 0.913 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.911 | |
| 3r9x | GNP | GTPase Era | / | 0.909 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.905 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.904 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.904 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.902 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.902 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.900 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.894 | |
| 4ldj | GDP | GTPase KRas | / | 0.894 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.891 | |
| 2cl6 | CAG | GTPase HRas | / | 0.890 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.887 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.885 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.883 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.880 | |
| 4obe | GDP | GTPase KRas | / | 0.879 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.876 | |
| 4lpk | GDP | GTPase KRas | / | 0.876 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.875 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.873 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.872 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.872 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.870 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.868 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.867 | |
| 4luc | GDP | GTPase KRas | / | 0.865 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.864 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.863 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.863 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.862 | |
| 3ref | GDP | Rho family GTPase | / | 0.860 | |
| 4lrw | GDP | GTPase KRas | / | 0.859 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.858 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.857 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.856 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.855 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.852 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.849 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.849 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.847 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.842 | |
| 3ftq | GNP | Septin-2 | / | 0.842 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.841 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.840 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.839 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.839 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.838 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.837 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.837 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.837 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.837 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.836 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.835 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.835 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.834 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.832 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.831 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.831 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.831 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.827 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.826 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.826 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.826 | |
| 4db1 | ANP | Myosin-7 | / | 0.825 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.823 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.823 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.822 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.821 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.818 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.817 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.817 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.816 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.815 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.815 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.814 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.814 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.814 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.812 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.811 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.810 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.810 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.798 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.796 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.795 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.795 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.794 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.794 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.793 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.792 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.789 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.789 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.787 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.786 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.785 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.784 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.784 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.782 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.780 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.779 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.773 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.773 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.773 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.772 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.771 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.770 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.770 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.770 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.768 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.768 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.765 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.765 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.765 | |
| 5bn3 | ADP | NEQ263 | / | 0.765 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.764 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.763 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.762 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.762 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.761 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.761 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.760 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.759 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.759 | |
| 2fna | ADP | Uncharacterized protein | / | 0.756 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.756 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.756 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.755 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.755 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.755 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.755 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.755 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.753 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.753 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.752 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.752 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.752 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.751 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.751 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.750 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.750 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.750 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.749 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.749 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.749 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.748 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.747 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.746 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.746 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.745 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.742 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.742 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.742 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.740 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.740 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.738 | |
| 1ank | ANP | Adenylate kinase | / | 0.737 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.737 | |
| 1xms | ANP | Protein RecA | / | 0.737 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.737 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.736 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.736 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.735 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.735 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.734 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.734 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.734 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.731 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.729 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.728 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.728 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.727 | |
| 4yqf | GDP | Septin-9 | / | 0.727 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.726 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.726 | |
| 1xmv | ADP | Protein RecA | / | 0.725 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.725 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.725 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.725 | |
| 2zts | ADP | Uncharacterized protein | / | 0.725 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.725 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.724 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.723 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.722 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.721 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.721 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.721 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.721 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.721 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.720 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.720 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.720 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.720 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.719 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.718 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.718 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.718 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.718 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.717 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.716 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.716 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.715 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.715 | |
| 4c30 | ANP | DNA helicase | / | 0.715 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.714 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.713 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.713 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.713 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.712 | |
| 5cyo | GDP | Septin-9 | / | 0.712 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.711 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.711 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.709 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.708 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.708 | |
| 1nly | AGS | Cag alpha | / | 0.707 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.707 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.707 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.706 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.705 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.705 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.705 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.704 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.704 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.704 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.703 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.702 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.701 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.701 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.701 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.700 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.699 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.699 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.698 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.697 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.697 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.697 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.697 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.697 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.695 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.695 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.694 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.693 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.692 | |
| 5dac | AGS | Uncharacterized protein | / | 0.692 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.690 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.690 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.689 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.689 | |
| 4pl0 | ANP | Microcin-J25 export ATP-binding/permease protein McjD | / | 0.689 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.687 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.686 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.686 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.685 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.684 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.684 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.684 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.684 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.684 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.681 | |
| 3hpr | AP5 | Adenylate kinase | / | 0.681 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.681 | |
| 3hpq | AP5 | Adenylate kinase | / | 0.680 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.680 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.678 | |
| 2zrj | AGS | Protein RecA | / | 0.678 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.677 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.676 | |
| 2ad5 | ADP | CTP synthase | / | 0.675 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.674 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.674 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.674 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.674 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.673 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.672 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.672 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.671 | |
| 1zm7 | TTP | Deoxynucleoside kinase | / | 0.670 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.670 | |
| 1g6o | ADP | Cag alpha | / | 0.669 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.669 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.668 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.668 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.668 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.668 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.667 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.667 | |
| 4lfg | IPE | Putative geranyltranstransferase | / | 0.667 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.666 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.665 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.665 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.664 | |
| 2eck | ADP | Adenylate kinase | / | 0.662 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.661 | |
| 2r6g | ATP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.660 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.660 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.659 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.659 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.659 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.658 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.657 | |
| 4dem | YS4 | Farnesyl pyrophosphate synthase | 2.5.1.10 | 0.657 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.656 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.656 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.655 | |
| 1a9x | ADP | Carbamoyl-phosphate synthase large chain | / | 0.654 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.654 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.653 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.653 | |
| 4xvu | ATP | ATPase GET3 | / | 0.653 | |
| 1dj3 | GDP | Adenylosuccinate synthetase, chloroplastic | / | 0.652 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.652 | |
| 2zxu | DST | tRNA dimethylallyltransferase | 2.5.1.75 | 0.652 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.652 | |
| 4iij | GTP | Tubulin alpha-1B chain | / | 0.650 |