sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3pit | GNP | Ras-related protein M-Ras |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3pit | GNP | Ras-related protein M-Ras | / | 1.242 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.198 | |
| 3lbh | GNP | GTPase HRas | / | 1.196 | |
| 4g0n | GNP | GTPase HRas | / | 1.192 | |
| 3i3s | GNP | GTPase HRas | / | 1.189 | |
| 3k8y | GNP | GTPase HRas | / | 1.188 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.184 | |
| 3lbi | GNP | GTPase HRas | / | 1.181 | |
| 3rs5 | GNP | GTPase HRas | / | 1.181 | |
| 4dlx | GNP | GTPase HRas | / | 1.179 | |
| 4dlz | GNP | GTPase HRas | / | 1.179 | |
| 4dlv | GNP | GTPase HRas | / | 1.178 | |
| 3lbn | GNP | GTPase HRas | / | 1.177 | |
| 4l9w | GNP | GTPase HRas | / | 1.176 | |
| 3rs7 | GNP | GTPase HRas | / | 1.166 | |
| 3rs4 | GNP | GTPase HRas | / | 1.165 | |
| 3ddc | GNP | GTPase HRas | / | 1.164 | |
| 3l8y | GNP | GTPase HRas | / | 1.163 | |
| 4dlt | GNP | GTPase HRas | / | 1.163 | |
| 3rsl | GNP | GTPase HRas | / | 1.162 | |
| 3v4f | GNP | GTPase HRas | / | 1.161 | |
| 2rgc | GNP | GTPase HRas | / | 1.160 | |
| 2rge | GNP | GTPase HRas | / | 1.156 | |
| 4dsn | GCP | GTPase KRas | / | 1.152 | |
| 4dlw | GNP | GTPase HRas | / | 1.148 | |
| 3oiw | GNP | GTPase HRas | / | 1.147 | |
| 4nyj | GNP | GTPase HRas | / | 1.145 | |
| 5b2z | GNP | GTPase HRas | / | 1.145 | |
| 2rgb | GNP | GTPase HRas | / | 1.144 | |
| 3rs0 | GNP | GTPase HRas | / | 1.144 | |
| 2c5l | GTP | GTPase HRas | / | 1.125 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.110 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.099 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.092 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.087 | |
| 4dls | GNP | GTPase HRas | / | 1.087 | |
| 3oiv | GNP | GTPase HRas | / | 1.085 | |
| 4nyi | GNP | GTPase HRas | / | 1.080 | |
| 4k81 | GTP | GTPase HRas | / | 1.077 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.068 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.063 | |
| 2rgg | GNP | GTPase HRas | / | 1.062 | |
| 3k9l | GNP | GTPase HRas | / | 1.062 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.058 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.051 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.050 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.041 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.036 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.035 | |
| 3tgp | GNP | GTPase HRas | / | 1.028 | |
| 4dso | GSP | GTPase KRas | / | 1.023 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.019 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.018 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.017 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.006 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.006 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.000 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.999 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.998 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.997 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.995 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.993 | |
| 4xvq | GNP | GTPase HRas | / | 0.992 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.990 | |
| 4xvr | GNP | GTPase HRas | / | 0.988 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.985 | |
| 3kud | GDP | GTPase HRas | / | 0.981 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.981 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.980 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.979 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.969 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.967 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.962 | |
| 3oiu | GNP | GTPase HRas | / | 0.961 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.958 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.958 | |
| 4l9s | GDP | GTPase HRas | / | 0.955 | |
| 2ce2 | GDP | GTPase HRas | / | 0.953 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.953 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.950 | |
| 4ql3 | GDP | GTPase KRas | / | 0.950 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.949 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.943 | |
| 4q03 | GDP | GTPase KRas | / | 0.941 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.939 | |
| 4mit | GTP | Rho-related protein racC | / | 0.938 | |
| 4l8g | GDP | GTPase KRas | / | 0.937 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 0.937 | |
| 4wa7 | GDP | GTPase KRas | / | 0.936 | |
| 1lfd | GNP | GTPase HRas | / | 0.935 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.934 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.932 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.931 | |
| 4epw | GDP | GTPase KRas | / | 0.931 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.929 | |
| 4tq9 | GDP | GTPase KRas | / | 0.928 | |
| 4epx | GDP | GTPase KRas | / | 0.926 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.925 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.925 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.919 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.918 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.917 | |
| 4q02 | GDP | GTPase KRas | / | 0.913 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.913 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.912 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.911 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.911 | |
| 2cl6 | CAG | GTPase HRas | / | 0.910 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.907 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.904 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.904 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.902 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.902 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.901 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.899 | |
| 4dsu | GDP | GTPase KRas | / | 0.899 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.897 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.897 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.895 | |
| 4ldj | GDP | GTPase KRas | / | 0.894 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.893 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.893 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.890 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.886 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.886 | |
| 4lv6 | GDP | GTPase KRas | / | 0.886 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.886 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.885 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.884 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.882 | |
| 4obe | GDP | GTPase KRas | / | 0.882 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.879 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.877 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.874 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.873 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.873 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.872 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.872 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.870 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.869 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.868 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.867 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.863 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.863 | |
| 3ref | GDP | Rho family GTPase | / | 0.861 | |
| 4lpk | GDP | GTPase KRas | / | 0.861 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.860 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.860 | |
| 4lrw | GDP | GTPase KRas | / | 0.859 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.855 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.855 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.852 | |
| 4luc | GDP | GTPase KRas | / | 0.849 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.846 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.846 | |
| 3r9x | GNP | GTPase Era | / | 0.844 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.844 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.841 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.840 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.840 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.838 | |
| 3ftq | GNP | Septin-2 | / | 0.836 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.834 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.834 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.834 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.832 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.830 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.830 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.829 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.829 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.828 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.827 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.827 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.826 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.824 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.824 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.823 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.823 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.821 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.821 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.820 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.820 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.819 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.818 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.817 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.817 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.817 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.815 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.814 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.814 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.812 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.811 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.811 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.811 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.810 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.809 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.808 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.807 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.806 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.804 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.803 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.802 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.801 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.801 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.800 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.796 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.796 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.796 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.795 | |
| 5bn3 | ADP | NEQ263 | / | 0.795 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.794 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.793 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.792 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.791 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.790 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.790 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.789 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.789 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.788 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.788 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.788 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.786 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.786 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.785 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.781 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.781 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.779 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.778 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.778 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.777 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.776 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.774 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.774 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.772 | |
| 2fna | ADP | Uncharacterized protein | / | 0.772 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.772 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.771 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.771 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.771 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.771 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.770 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.769 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.769 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.769 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.769 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.768 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.768 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.768 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.767 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.764 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.764 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.763 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.763 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.762 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.761 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.761 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.760 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.759 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.758 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.758 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.758 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.757 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.757 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.757 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.757 | |
| 1ank | ANP | Adenylate kinase | / | 0.756 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.756 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.756 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.756 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.755 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.755 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.754 | |
| 4ike | ADP | Adenylate kinase | / | 0.754 | |
| 4jld | ADP | Adenylate kinase | / | 0.754 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.753 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.753 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.753 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.752 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.751 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.750 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.749 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.749 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.749 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.748 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.748 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.747 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.747 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.747 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.746 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.746 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.746 | |
| 4jlo | ADP | Adenylate kinase | / | 0.745 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.743 | |
| 5cyo | GDP | Septin-9 | / | 0.743 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.742 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.742 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.740 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.740 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.740 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.740 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.740 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.740 | |
| 2zts | ADP | Uncharacterized protein | / | 0.739 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.739 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.738 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.737 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.737 | |
| 1xmv | ADP | Protein RecA | / | 0.737 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.736 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.736 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.736 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.736 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.735 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.734 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.734 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.734 | |
| 4dvg | GSP | Rho family GTPase | / | 0.734 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.733 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.733 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.732 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.732 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.731 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.730 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.729 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.729 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.728 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.727 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.726 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.726 | |
| 4yqf | GDP | Septin-9 | / | 0.726 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.725 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.725 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.724 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.724 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.724 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.724 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.723 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.723 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.723 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.723 | |
| 4v02 | ATP | Site-determining protein | / | 0.723 | |
| 4xvu | ATP | ATPase GET3 | / | 0.723 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.722 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.721 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.721 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.720 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.720 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.720 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.719 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.719 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.719 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.719 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.718 | |
| 1nly | AGS | Cag alpha | / | 0.717 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.717 | |
| 4c30 | ANP | DNA helicase | / | 0.715 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.714 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.714 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.714 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.714 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.713 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.713 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.713 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.712 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.712 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.712 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.712 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.712 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.711 | |
| 4ymu | ATP | ABC-type polar amino acid transport system, ATPase component | / | 0.711 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.710 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.710 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.708 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.708 | |
| 1xms | ANP | Protein RecA | / | 0.707 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.707 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.706 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.706 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.706 | |
| 5ftc | ADP | TPR domain protein | / | 0.706 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.704 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.703 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.702 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.702 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.702 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.702 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.702 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.700 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.700 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.699 | |
| 4db1 | ANP | Myosin-7 | / | 0.699 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.698 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.697 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.694 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.692 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.691 | |
| 4x8o | AP5 | Adenylate kinase | / | 0.691 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.690 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.690 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.690 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.688 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.688 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.688 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.687 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.687 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.686 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.685 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.685 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.685 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.684 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.684 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.684 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.682 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.681 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.680 | |
| 2eck | ADP | Adenylate kinase | / | 0.680 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.679 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.678 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.678 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.677 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.677 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.676 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.676 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.676 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.676 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.675 | |
| 4e03 | ADP | Plasmid partitioning protein ParF | / | 0.675 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.674 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.674 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.674 | |
| 1dvr | ATF | Adenylate kinase | / | 0.673 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.673 | |
| 2zrj | AGS | Protein RecA | / | 0.673 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.673 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.673 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.671 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.671 | |
| 4bub | ADP | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase | / | 0.671 | |
| 4iei | ADP | Gene 2 protein | / | 0.670 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.669 | |
| 2ad5 | ADP | CTP synthase | / | 0.669 | |
| 2zr9 | DTP | Protein RecA | / | 0.668 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.667 | |
| 2dft | ADP | Shikimate kinase | 2.7.1.71 | 0.667 | |
| 3d8b | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.667 | |
| 5dac | AGS | Uncharacterized protein | / | 0.667 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.665 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA2 | 3.6.3 | 0.665 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA1 | / | 0.665 | |
| 3thy | ADP | DNA mismatch repair protein Msh2 | / | 0.663 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.663 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.662 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.662 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.659 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.659 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.659 | |
| 2ce7 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.658 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.656 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.655 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.654 | |
| 1s4p | GDP | Glycolipid 2-alpha-mannosyltransferase | / | 0.653 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.652 | |
| 2vp0 | TTP | Deoxynucleoside kinase | / | 0.652 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.651 | |
| 4jky | ADP | Adenylate kinase | / | 0.651 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.650 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.650 | |
| 2rgx | AP5 | Adenylate kinase | / | 0.650 |