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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2pdc393Aldose reductase1.1.1.21

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
2pdc393Aldose reductase1.1.1.211.000
1t40ID5Aldose reductase1.1.1.210.696
2pdj393Aldose reductase1.1.1.210.688
2pdp393Aldose reductase1.1.1.210.686
1z3n3NAAldose reductase1.1.1.210.679
3mb9ZSTAldose reductase1.1.1.210.674
1z8962PAldose reductase1.1.1.210.653
3m64393Aldose reductase1.1.1.210.650
2i16LDTAldose reductase1.1.1.210.649
4yu153NAldose reductase1.1.1.210.649
2pzn393Aldose reductase1.1.1.210.648
3lenZSTAldose reductase1.1.1.210.647
2dv0ZSTAldose reductase1.1.1.210.646
3lqlLDTAldose reductase1.1.1.210.641
3g5eQ74Aldose reductase1.1.1.210.640
3lboLDTAldose reductase1.1.1.210.640
4gca2X9Aldose reductase1.1.1.210.638
3ghuLDTAldose reductase1.1.1.210.637
2iki388Aldose reductase1.1.1.210.635
1ieiZESAldose reductase1.1.1.210.630
1us0LDTAldose reductase1.1.1.210.629
2pd5ZSTAldose reductase1.1.1.210.628
3ghrLDTAldose reductase1.1.1.210.628
2qxwLDTAldose reductase1.1.1.210.627
3m4h388Aldose reductase1.1.1.210.627
1pwlBFIAldose reductase1.1.1.210.626
1t41ID5Aldose reductase1.1.1.210.626
2ikj393Aldose reductase1.1.1.210.626
2pdxZSTAldose reductase1.1.1.210.626
2duxZSTAldose reductase1.1.1.210.625
2duzZSTAldose reductase1.1.1.210.625
3m0iZSTAldose reductase1.1.1.210.625
3mc5393Aldose reductase1.1.1.210.625
3ghsLDTAldose reductase1.1.1.210.622
2ikhLITAldose reductase1.1.1.210.620
2hvoZSTAldose reductase1.1.1.210.619
2fz9ZSTAldose reductase1.1.1.210.618
2fz8ZSTAldose reductase1.1.1.210.616
2pdfZSTAldose reductase1.1.1.210.615
3ghtLDTAldose reductase1.1.1.210.615
2hv5ZSTAldose reductase1.1.1.210.614
2i17LDTAldose reductase1.1.1.210.614
2pdn47DAldose reductase1.1.1.210.611
2pdbZSTAldose reductase1.1.1.210.609
2pdg47DAldose reductase1.1.1.210.603
3ld5LDTAldose reductase1.1.1.210.601
2pdu393Aldose reductase1.1.1.210.595
1frbZSTAldose reductase-related protein 2/0.591
3lz5LDTAldose reductase1.1.1.210.586
3t423T4Aldose reductase1.1.1.210.563
2pdlTOLAldose reductase1.1.1.210.561
2pdq47DAldose reductase1.1.1.210.561
2pdh47DAldose reductase1.1.1.210.556
2fzdTOLAldose reductase1.1.1.210.538
2nvcITAAldose reductase1.1.1.210.524
1zuaTOLAldo-keto reductase family 1 member B101.1.10.516
3uzxAOM3-oxo-5-beta-steroid 4-dehydrogenase/0.516
1ah3TOLAldose reductase1.1.1.210.507
5liu388Aldo-keto reductase family 1 member B101.1.10.507
1el3I84Aldose reductase1.1.1.210.501
2fzbTOLAldose reductase1.1.1.210.498
2agtFIDAldose reductase1.1.1.210.494
4phlPILPhosphodiesterase/0.492
2f2kTGGAldose reductase1.1.1.210.489
2oazI96Methionine aminopeptidase 2/0.488
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.487
4mm729JNa(+):neurotransmitter symporter (Snf family)/0.486
1uhoVDNcGMP-specific 3',5'-cyclic phosphodiesterase/0.485
2cbqTH2Neocarzinostatin/0.485
3rj0BLDProtein BRASSINOSTEROID INSENSITIVE 12.7.10.10.484
3aivHBO4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase, chloroplastic3.2.1.1820.479
4k4eK4ETankyrase-12.4.2.300.479
1ekoI84Aldose reductase1.1.1.210.478
4awtFMNNADH:flavin oxidoreductase Sye1/0.478
3gx9TXDMorphinone reductase/0.477
3u2cSUZAldose reductase1.1.1.210.476
3sn6P0GBeta-2 adrenergic receptor/0.476
1ihiIU5Aldo-keto reductase family 1 member C2/0.475
2cekN8TAcetylcholinesterase3.1.1.70.475
2ourCMPcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.475
2pdwFIDAldose reductase1.1.1.210.474
1h22E10Acetylcholinesterase3.1.1.70.473
1ro6ROLcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.473
2w6cBM4Acetylcholinesterase3.1.1.70.473
4pnmNU1Tankyrase-22.4.2.300.473
1xoqROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.472
3tvxPNXcAMP-specific 3',5'-cyclic phosphodiesterase 4A3.1.4.530.472
3v35NTIAldose reductase1.1.1.210.472
3jq8DX3Pteridine reductase, putative/0.471
2fm0M98cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.470
4dbw511Aldo-keto reductase family 1 member C3/0.470
1ni4TPPPyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial1.2.4.10.469
1ni4TPPPyruvate dehydrogenase E1 component subunit beta, mitochondrial1.2.4.10.469
1ry0PG2Aldo-keto reductase family 1 member C3/0.469
3g4iD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.469
3q9bB3NAcetylpolyamine amidohydrolase/0.469
1rsgFADPolyamine oxidase FMS1/0.467
3k4s0MOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.467
4lm4JPZcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.467
4lngJANCaaX farnesyltransferase beta subunit Ram1/0.467
1lnmDTXBilin-binding protein/0.466
1xomCIOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.466
1yw7A41Methionine aminopeptidase 2/0.466
1zklIBMHigh affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A3.1.4.530.466
2ea4F79Methionine aminopeptidase 2/0.466
2f3815MAldo-keto reductase family 1 member C3/0.466
3g4lROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.466
3p9tTCLRepressor/0.466
3zv7NHGAcetylcholinesterase3.1.1.70.466
4ga8SBIAldo-keto reductase family 1 member B101.1.10.466
2iqdLPAAldose reductase1.1.1.210.465
3tfjTHGDimethylsulfonioproprionate demethylase DmdA2.1.1.2690.465
4araC56Acetylcholinesterase3.1.1.70.465
4hyf1AKTankyrase-22.4.2.300.465
1u65CP0Acetylcholinesterase3.1.1.70.464
2xuhTZ4Acetylcholinesterase3.1.1.70.464
2xupTZ5Acetylcholinesterase3.1.1.70.464
1zgcA2EAcetylcholinesterase3.1.1.70.463
2pdkSBIAldose reductase1.1.1.210.463
2wu4HBPAcetylcholinesterase3.1.1.70.463
3dopNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.463
3zkyWT4Isopenicillin N synthase1.21.3.10.463
4heu15JcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.463
4kxjP34Nucleoprotein/0.463
1q9mROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.462
1ut6A8NAcetylcholinesterase3.1.1.70.461
1y2bDEEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.461
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.461
2ouu35GcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.460
4g2yNI5cGMP-specific 3',5'-cyclic phosphodiesterase/0.460
5ds309LPoly [ADP-ribose] polymerase 12.4.2.300.460
1dghNDPCatalase1.11.1.60.459
2ouyCMPcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.459
3c1oNAPEugenol synthase/0.459
3p2vDOYAldose reductase1.1.1.210.459
3uzzTES3-oxo-5-beta-steroid 4-dehydrogenase/0.459
1m9nAMZBifunctional purine biosynthesis protein PURH2.1.2.30.458
1oynROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.458
1tbbROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.458
1vkgCRIHistone deacetylase 83.5.1.980.458
1votHUPAcetylcholinesterase3.1.1.70.458
2aj4ANPGalactokinase2.7.1.60.458
2gyuHI6Acetylcholinesterase3.1.1.70.458
2wmdZZ0NmrA-like family domain-containing protein 1/0.458
2xufTZ4Acetylcholinesterase3.1.1.70.458
2xukTZ5Acetylcholinesterase3.1.1.70.458
3g4kROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.458
3geyP34Poly [ADP-ribose] polymerase 152.4.2.300.458
4bjcRPBTankyrase-22.4.2.300.458
1kyxCRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.457
1u08PLPMethionine aminotransferase/0.457
1w4lGL8Acetylcholinesterase3.1.1.70.457
1zknIBMcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.457
2is72CLAldose reductase1.1.1.210.457
2pd9FIDAldose reductase1.1.1.210.457
2vt4P32Beta-1 adrenergic receptor/0.457
3n3zIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.457
3ndjJHZMethyltransferase/0.457
4e32DWNMethyltransferase/0.457
4jtrIZPAldo-keto reductase family 1 member C2/0.457
1gpnHUBAcetylcholinesterase3.1.1.70.456
2gouFMNNADH:flavin oxidoreductase Sye1/0.456
2rqfJH3Hemolymph juvenile hormone binding protein/0.456
2xujTZ5Acetylcholinesterase3.1.1.70.456
3dynPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.456
3iakEV1cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.456
4e907RGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.456
4ia05BBcGMP-specific 3',5'-cyclic phosphodiesterase/0.456
4l6s1WQPoly [ADP-ribose] polymerase 12.4.2.300.456
2xnvVU3Soluble acetylcholine receptor/0.455
3ghwGHWDihydrofolate reductase1.5.1.30.455
3o57ZG2cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.455
3sl6JN8cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.455
4b7zQ4QAcetylcholinesterase3.1.1.70.455
4hf415HcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.455
4li61XOTankyrase-12.4.2.300.455
1odcA8BAcetylcholinesterase3.1.1.70.454
1s36CEIObelin/0.454
1v08NTZ4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1, chloroplastic3.2.1.1820.454
2xi4AFTAcetylcholinesterase3.1.1.70.454
3hmvHBTcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.454
3mjrAC2Deoxycytidine kinase2.7.1.740.454
3wd9QPCcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.454
3zj7C1KStrictosidine-O-beta-D-glucosidase3.2.1.1050.454
1lvu9PPPurine nucleoside phosphorylase2.4.2.10.453
1nquRDL6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.453
1qtiGNTAcetylcholinesterase3.1.1.70.453
3g58988cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.453
3gg2UGASugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family/0.453
4msk2C8Tankyrase-12.4.2.300.453
1e66HUXAcetylcholinesterase3.1.1.70.452
1ro98BRcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.452
2xuoTZ4Acetylcholinesterase3.1.1.70.452
3g1rNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.452
3qpnPFKcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.452
3uzxAOX3-oxo-5-beta-steroid 4-dehydrogenase/0.452
1hqtNAPAlcohol dehydrogenase [NADP(+)]1.1.1.20.451
1nqvLMZ6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.451
3aiqHBO4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1b, chloroplastic3.2.1.1820.451
3f3y4OABile salt sulfotransferase2.8.2.140.451
4ey7E20Acetylcholinesterase3.1.1.70.451
4jq1NPSAldo-keto reductase family 1 member C2/0.451
4xp1LDPSodium-dependent dopamine transporter/0.451
1q84TZ4Acetylcholinesterase3.1.1.70.450
1udtVIAcGMP-specific 3',5'-cyclic phosphodiesterase/0.450
1y2k7DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.450
2gywOBIAcetylcholinesterase3.1.1.70.450
2xugTZ4Acetylcholinesterase3.1.1.70.450
3akn11DFatty acid-binding protein, intestinal/0.450
3dy8IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.450
5erm210Fusicoccadiene synthase4.2.3.430.450
5fd8A5APutative carboxypeptidase yocD/0.450
1s1rNAPAldo-keto reductase family 1 member C3/0.449
2i65NADADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 13.2.2.60.449
2jf6S55Strictosidine-O-beta-D-glucosidase3.2.1.1050.449
2poqISDTrans-1,2-dihydrobenzene-1,2-diol dehydrogenase1.3.1.200.449
4kmzFOLFolate receptor beta/0.449
4lsaBLDProtein BRASSINOSTEROID INSENSITIVE 12.7.10.10.449
1y2c3DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.448
2bfmTOPPteridine reductase 11.5.1.330.448
2vbpVB1Isopenicillin N synthase1.21.3.10.448
3c3xNAPEugenol synthase 11.1.1.3180.448
3vf60H6Glucokinase2.7.1.20.448
1lkeDOGBilin-binding protein/0.447
1o5rFR9Adenosine deaminase3.5.4.40.447
1p8dCO1Oxysterols receptor LXR-beta/0.447
1rxjBNIStreptavidin/0.447
1xonPILcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.447
2v0mKLNCytochrome P450 3A4/0.447
2vvlFADMonoamine oxidase N1.4.3.40.447
2xuiTZ5Acetylcholinesterase3.1.1.70.447
3ce0P34Poly [ADP-ribose] polymerase 32.4.2.300.447
4f0rMTA5-methylthioadenosine/S-adenosylhomocysteine deaminase/0.447
4gts7TPGeranylgeranyl transferase type-2 subunit beta2.5.1.600.447
4jtqNAPAldo-keto reductase family 1 member C2/0.447
4jtrIBPAldo-keto reductase family 1 member C2/0.447
4u140HKMuscarinic acetylcholine receptor M3/0.447
1pz1NAPGeneral stress protein 69/0.446
1qv0CZHObelin/0.446
2g5w8PG12-oxophytodienoate reductase 31.3.1.420.446
2p1oNLAProtein TRANSPORT INHIBITOR RESPONSE 1/0.446
2tplHPPTyrosine phenol-lyase4.1.99.20.446
3caqNDP3-oxo-5-beta-steroid 4-dehydrogenase/0.446
3exhTPPPyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial1.2.4.10.446
3exhTPPPyruvate dehydrogenase E1 component subunit beta, mitochondrial1.2.4.10.446
3ghvGHCDihydrofolate reductase1.5.1.30.446
3h7uNAPNADPH-dependent aldo-keto reductase, chloroplastic/0.446
4h7c10HAldo-keto reductase family 1 member C3/0.446
4m0f1YKAcetylcholinesterase3.1.1.70.446
4tjy3GNTankyrase-22.4.2.300.446
1al7HSTPeroxisomal (S)-2-hydroxy-acid oxidase1.1.3.150.445
1y2e5DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.445
1zgbA1EAcetylcholinesterase3.1.1.70.445
2o8h227cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.445
3o56ZG1cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.445
3x04GNPPhosphatidylinositol 5-phosphate 4-kinase type-2 beta2.7.1.1490.445
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.445
4wevSUZAldo-keto reductase family 1 member B101.1.10.445
1pj6FOLDimethylglycine oxidase1.5.3.100.444
1yw9A84Methionine aminopeptidase 2/0.444
2j3qTFLAcetylcholinesterase3.1.1.70.444
2zu9GDPMannosyl-3-phosphoglycerate synthase2.4.1.2170.444
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.444
4dz5NAPAldo-keto reductase family 1 member C3/0.444
1fdsESTEstradiol 17-beta-dehydrogenase 11.1.1.620.443
1fmlRTLRetinol dehydratase/0.443
2bjsACVIsopenicillin N synthase1.21.3.10.443
2ha6SCKAcetylcholinesterase3.1.1.70.443
2ovyPFJcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.443
2xjeU5PCytosolic purine 5'-nucleotidase3.1.3.50.443
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.443
3dyqPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.443
1e2lTMCThymidine kinase/0.442
1eveE20Acetylcholinesterase3.1.1.70.442
1xorZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.442
1yw8A75Methionine aminopeptidase 2/0.442
2weyEV1cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.442
2y6fM9FIsopenicillin N synthase1.21.3.10.442
4ddl0JQcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.442
4kn104JFolate receptor beta/0.442
4mvh2F5cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.442
5p2pDHGPhospholipase A2, major isoenzyme3.1.1.40.442
3d4sTIMBeta-2 adrenergic receptor/0.442
1ry8RUTAldo-keto reductase family 1 member C3/0.441
2cmfF11Acetylcholinesterase3.1.1.70.441
2pdyFIDAldose reductase1.1.1.210.441
3ppkFNISerine/threonine-protein kinase B-raf2.7.11.10.441
3w5eNVWcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.441
4ajfF03cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.441
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.440
1kquBR4Phospholipase A2, membrane associated/0.440
1kyvRBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.440
1p91SAM23S rRNA (guanine(745)-N(1))-methyltransferase/0.440
2a58RBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.440
2ga2A19Methionine aminopeptidase 2/0.440
2rd2QSIGlutamine--tRNA ligase6.1.1.180.440
2zevIPEGeranylgeranyl pyrophosphate synthase/0.440
3hxeBD8Geranylgeranyl transferase type-2 subunit beta2.5.1.600.440
4bj9UHBTankyrase-22.4.2.300.440
4g2wNI0cGMP-specific 3',5'-cyclic phosphodiesterase/0.440
4j8tDOGUncharacterized PhzA/B-like protein PA3332/0.440
4xo7NAPAldo-keto reductase family 1 member C2/0.440