1.520 Å
X-ray
2007-02-12
| Name: | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A |
|---|---|
| ID: | PDE10_HUMAN |
| AC: | Q9Y233 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 3.1.4.17 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 15.877 |
|---|---|
| Number of residues: | 30 |
| Including | |
| Standard Amino Acids: | 27 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.979 | 732.375 |
| % Hydrophobic | % Polar |
|---|---|
| 57.14 | 42.86 |
| According to VolSite | |

| HET Code: | 35G |
|---|---|
| Formula: | C10H11N5O7P |
| Molecular weight: | 344.197 g/mol |
| DrugBank ID: | DB02315 |
| Buried Surface Area: | 53.32 % |
| Polar Surface area: | 183.16 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 10 |
| H-Bond Donors: | 3 |
| Rings: | 4 |
| Aromatic rings: | 1 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| 5.26965 | 12.5679 | 42.5813 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C4' | CE2 | TYR- 524 | 3.67 | 0 | Hydrophobic |
| O5' | NE2 | HIS- 525 | 2.84 | 121.29 | H-Bond (Protein Donor) |
| C3' | CD1 | LEU- 635 | 3.99 | 0 | Hydrophobic |
| C2' | CD2 | LEU- 675 | 3.55 | 0 | Hydrophobic |
| C1' | CD1 | ILE- 692 | 3.68 | 0 | Hydrophobic |
| C5' | CG2 | ILE- 692 | 4.32 | 0 | Hydrophobic |
| C5' | CZ | PHE- 696 | 3.9 | 0 | Hydrophobic |
| N7 | NE2 | GLN- 726 | 3 | 166.17 | H-Bond (Protein Donor) |
| DuAr | DuAr | PHE- 729 | 3.7 | 0 | Aromatic Face/Face |
| C2' | CZ | PHE- 729 | 3.64 | 0 | Hydrophobic |