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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

2ouu

1.520 Å

X-ray

2007-02-12

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A
ID:PDE10_HUMAN
AC:Q9Y233
Organism:Homo sapiens
Reign:Eukaryota
TaxID:9606
EC Number:3.1.4.17


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:15.877
Number of residues:30
Including
Standard Amino Acids: 27
Non Standard Amino Acids: 1
Water Molecules: 2
Cofactors:
Metals: MG

Cavity properties

LigandabilityVolume (Å3)
0.979732.375

% Hydrophobic% Polar
57.1442.86
According to VolSite

Ligand :
2ouu_1 Structure
HET Code: 35G
Formula: C10H11N5O7P
Molecular weight: 344.197 g/mol
DrugBank ID: DB02315
Buried Surface Area:53.32 %
Polar Surface area: 183.16 Å2
Number of
H-Bond Acceptors: 10
H-Bond Donors: 3
Rings: 4
Aromatic rings: 1
Anionic atoms: 1
Cationic atoms: 0
Rule of Five Violation: 1
Rotatable Bonds: 1

Mass center Coordinates

XYZ
5.2696512.567942.5813


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C4'CE2TYR- 5243.670Hydrophobic
O5'NE2HIS- 5252.84121.29H-Bond
(Protein Donor)
C3'CD1LEU- 6353.990Hydrophobic
C2'CD2LEU- 6753.550Hydrophobic
C1'CD1ILE- 6923.680Hydrophobic
C5'CG2ILE- 6924.320Hydrophobic
C5'CZPHE- 6963.90Hydrophobic
N7NE2GLN- 7263166.17H-Bond
(Protein Donor)
DuArDuArPHE- 7293.70Aromatic Face/Face
C2'CZPHE- 7293.640Hydrophobic