1.800 Å
X-ray
2006-12-12
| Name: | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A |
|---|---|
| ID: | PDE10_RAT |
| AC: | Q9QYJ6 |
| Organism: | Rattus norvegicus |
| Reign: | Eukaryota |
| TaxID: | 10116 |
| EC Number: | 3.1.4.17 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 32.359 |
|---|---|
| Number of residues: | 25 |
| Including | |
| Standard Amino Acids: | 24 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.959 | 705.375 |
| % Hydrophobic | % Polar |
|---|---|
| 55.50 | 44.50 |
| According to VolSite | |

| HET Code: | 227 |
|---|---|
| Formula: | C24H30N5O4S |
| Molecular weight: | 484.591 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 39.43 % |
| Polar Surface area: | 97.68 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 7 |
| H-Bond Donors: | 1 |
| Rings: | 5 |
| Aromatic rings: | 3 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| 11.6742 | 21.1326 | 41.7134 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C20 | CD2 | LEU- 625 | 3.93 | 0 | Hydrophobic |
| C28 | CZ | PHE- 629 | 3.16 | 0 | Hydrophobic |
| C21 | CG1 | VAL- 668 | 3.66 | 0 | Hydrophobic |
| C7 | CG2 | ILE- 682 | 4.47 | 0 | Hydrophobic |
| C21 | CD1 | ILE- 682 | 4.23 | 0 | Hydrophobic |
| C18 | CZ | TYR- 683 | 4.33 | 0 | Hydrophobic |
| C4 | SD | MET- 703 | 3.94 | 0 | Hydrophobic |
| C18 | SD | MET- 703 | 3.78 | 0 | Hydrophobic |
| C29 | SD | MET- 703 | 3.96 | 0 | Hydrophobic |
| C10 | SD | MET- 703 | 3.61 | 0 | Hydrophobic |
| C11 | CE | MET- 703 | 3.79 | 0 | Hydrophobic |
| O17 | NE2 | GLN- 716 | 3.09 | 158.13 | H-Bond (Protein Donor) |
| C21 | CD2 | PHE- 719 | 3.75 | 0 | Hydrophobic |
| C18 | CB | PHE- 719 | 3.84 | 0 | Hydrophobic |
| C10 | CD1 | PHE- 719 | 4.28 | 0 | Hydrophobic |
| C1 | CE1 | PHE- 719 | 3.48 | 0 | Hydrophobic |
| C9 | CB | PHE- 719 | 3.76 | 0 | Hydrophobic |
| DuAr | DuAr | PHE- 719 | 3.54 | 0 | Aromatic Face/Face |
| C23 | CG2 | VAL- 723 | 3.95 | 0 | Hydrophobic |