1.800 Å
X-ray
2006-12-12
Name: | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A |
---|---|
ID: | PDE10_RAT |
AC: | Q9QYJ6 |
Organism: | Rattus norvegicus |
Reign: | Eukaryota |
TaxID: | 10116 |
EC Number: | 3.1.4.17 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 32.359 |
---|---|
Number of residues: | 25 |
Including | |
Standard Amino Acids: | 24 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.959 | 705.375 |
% Hydrophobic | % Polar |
---|---|
55.50 | 44.50 |
According to VolSite |
HET Code: | 227 |
---|---|
Formula: | C24H30N5O4S |
Molecular weight: | 484.591 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 39.43 % |
Polar Surface area: | 97.68 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 1 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
11.6742 | 21.1326 | 41.7134 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C20 | CD2 | LEU- 625 | 3.93 | 0 | Hydrophobic |
C28 | CZ | PHE- 629 | 3.16 | 0 | Hydrophobic |
C21 | CG1 | VAL- 668 | 3.66 | 0 | Hydrophobic |
C7 | CG2 | ILE- 682 | 4.47 | 0 | Hydrophobic |
C21 | CD1 | ILE- 682 | 4.23 | 0 | Hydrophobic |
C18 | CZ | TYR- 683 | 4.33 | 0 | Hydrophobic |
C4 | SD | MET- 703 | 3.94 | 0 | Hydrophobic |
C18 | SD | MET- 703 | 3.78 | 0 | Hydrophobic |
C29 | SD | MET- 703 | 3.96 | 0 | Hydrophobic |
C10 | SD | MET- 703 | 3.61 | 0 | Hydrophobic |
C11 | CE | MET- 703 | 3.79 | 0 | Hydrophobic |
O17 | NE2 | GLN- 716 | 3.09 | 158.13 | H-Bond (Protein Donor) |
C21 | CD2 | PHE- 719 | 3.75 | 0 | Hydrophobic |
C18 | CB | PHE- 719 | 3.84 | 0 | Hydrophobic |
C10 | CD1 | PHE- 719 | 4.28 | 0 | Hydrophobic |
C1 | CE1 | PHE- 719 | 3.48 | 0 | Hydrophobic |
C9 | CB | PHE- 719 | 3.76 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 719 | 3.54 | 0 | Aromatic Face/Face |
C23 | CG2 | VAL- 723 | 3.95 | 0 | Hydrophobic |